RNA id: XM_036956294.1


Basic Information

Item Value
RNA id XM_036956294.1
length 3720
RNA type mRNA
GC content 0.51
exon number 22
gene id LOC110499434
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 36437205 ~ 36540905 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTGATGGACGTGTATCAGGAGGGATTAGTGGTAAAGATAGGCAGGCGTGTTCTCTCTCTGACGAGGCGgatttcaatctctctctcccaactgTTTAAACTGCTAGTGTCTCATCTCTCTCCAAACAACTGACTGCTCTCATCTCCCATGGCTCCgtaatatttgtgtgtgtgtgtctgtgtgggggggtgtttttatctccctgtctgtgtgtgtttgagaaagtgattcagtctctctttctgtgcGATGGCACTACTGCCTAAGGAGGCAGAACGATTCGATGGGCTATCTCTGCTATACTGGACCGTCATGGGGCCTCACGGCATCAACCGGGCCATTGAGAGACTGGAGTTCTGCGACTGCAAGAAAGGACTGGGGGTGAAGATCATCGGTGGCTACAGAGAGCAGACACGTGAGGAGTTTGGGATCTTCATCAAGCGGGTGTTACCGGGAGGGCTGGCTGCTCAGGATGGGAGGCTTAGAACGGGCGACCTCATTTTGGAAGTCAATAATATGAGTTTAGGAGGAGTAACCAACGAGAGGGCGGTGGATATCCTCCGGTCAGCGTCAGCCTCCAATCACATGTCTCTGATGGTTGCCAGGGACGATGAAAGCAGgCGGGAGTTCATTGAGTTGATGAATAAGTATGGCTCCCACAGCAGTTTTAAAGGAAGCTCAGGGAGGGTCTCCCCTACACAGCTCTCTACAGgaGGCAAGACAGACacagcctcctcctcttcctcctccagatCTACCAGTCCCACCAGCCAGCTCTTCAGTCCTAAAGAGGGGGTCACAGGACCTCCCTATACCACTGGGCCCCCCTATACGTCAAACCCCAACACAGCCCCTACACAGCCCGTCTTCAAtgaCAGCATCATTCAGTTGATATGCATCTCAAAAGGAACAGGCCTGGGCCTCATCATCAAGGGCGGAGCTAACCGAGCCGAGGGACCAATGGTGTTGATTCAGGAAATAGTGCCCGGAGGAGACTGCCAGAGGGACGGTAGACTACAGCCAGGAGACCAGCTGGTATCGATTAATAAGGAGTCGTTAATCGGAGTGACTTATGAGGAGGCTAGAAGTATCCTGACACGCACCAAACTCAGACCAGACCCTACGGTGGAGATAGCGTTTATGAGACACAGGACTTCCACCAGTTCTGCTTCCTCCAGCAGTGGCCCCCAGGGTCCTTTCACCCCACAGGGCGCAGCCAGTGGAGCCTCCTCAGTGCCCCCCACCAGGAGAGGGACCCTGGCTGTACTGGGGGCCCTGCCTCCCCCTCGGTCACTGCTCCAGCACAGGAGAACCACGCTCCCTGCAGCCCTCCCTGGAGCTCCCCTGGTGGTGCCCAAGATCACCTCCACCCTCAACCCCGCCAGCGAGACCCTGCCTTCTGTCAACCTCAGCCAGGTGCGAATGAGGACAGAACAGACGtgtgtctcctcccctcctcagagTCCCAGCACCGCAGACGCCAAGCCTGAATCCTCCACTGTATGGCAGCCAGTCAGCAGTCTCGTACCACAAAGGAAGTGCTCCCTCAGCTCCATCTGTCGCCTCAAACTGGAGAGGCTGGAGCAGGCTCTGGATGCATTGGGACTGAATCCTacagaggcacagagacagaCGTTGAGGGCCAGACTACAAACAGACCCTGCTGGGACAGTGGCCTACGCAGACTTTGAGACGCTGACGCGGGAGCTGTTCAAGCTACAGTTTGAGGAGTCAGAGGTGGGAGGTCAGAGGTTAAAGTTTGTGTCAGAAGACCTCTCCAGCCTCCTAGAGTCACCCACCAATACACGGTCTTCACTGTCTGACTCTGATGAcctagaggagatggagagactgagGAAAGACCACATCGAGGCTCTGAGAGAAATCAAGAAACTACAGGAGCAGTTGGCAGAGTCCGAGAGACTTCAACTGCAGATGCAGGGAGAGCTGAACAATGTcaaacagGAGGTCAAGTCTGGAGTTGAGGAGAGCCGTGCACTGCGGAGCAGGATCCACCTGTCTGAGGCAGCCCAGAAGCAGGCCAGGGGGATGGAGATGGATTATGAGGAGGTGATCCATCTCCTGGAGGCTGAGATAGCTGAGCTCCAGACCCAGAGGACAGAGCAGCCCGGCCagtccagcctggtgcagGATGAGACAGAGGAACTGAAGAAGAGAGTGGCCGTTCTGGAGTGTCAACTAAGGAAGAACGAGGAGGCCAAAAAGGGTTTTGAGGTGTCCATGGGTAAACTGCTCAACTTCGTGGAGAATGTCCAAGACTTCCTCATTGAAAATCAAGGACCTGTGAAGAGCTTCAGctCCGGTGACGTGAAGGCTGGAGCCTCCTCTCAGCCCTTGGGAGCCCGGGCGGGGAAGAAGTCCCAGTGGACAGCCGCCACACTAACCGCGGAGGCTAAAGAACTCACACGGACTGTTAGCGCCATTCTGGAGGTGGAGTaTCTTCCATATGGATGGGAAGAGGCCTACACTGCAGAAGGAGTCAAATACTTCATCAATCATGTGACGCAGACGACATCGTGGACCCATCCGGTGACCTGCAGCCTGGCTCTGGGGTTGGGGCTgtccgagagagagggggaggtatcAGCCGATGGACAGGAAGACAACACAGCCACCCCCAACCCCGACCACACCAAGACTTAGACCTGGGACAGTTCCAAAGGATATAACATTGCAGAATCTTCAGATAAACGTGTATTGAATAGACTAGATATTGTATGTCTTGGAGTTGGATAATAGAGAGGCCTCGCAGGCAGCTCTGTATAtaacatttctatctgaacgttctgtCGCGTTGCTCTTCCCCAAGAGAAGAAAAAACACCAGGCATTGGTGAAACAACACCAGTCTTCCTCTACAAATAGAGATTCAGTAGAACCCTAGAGGTGGATACAGAGACAACTACCTGAAACCCTTTAGGAGCCCCAACAAAATACTGTCTTTAAAATCATATAAGTAGCTACACATAATGTTTCATTAAATGGCAGTGTACGTTAGCTGTTCTGGTGAATATGCAGTTTAaactttatatatatttttttacattaaaacCTATCCGTAATTGGGCTGAGCAGTGTATAGACAGTTAATTAATTGTGTTAAAATGAATTGCACAAGGCTAGCTTCCCGGTTCGATGGAGTTGATTCATGACTCTTATTATATCGCTGTGGGTTTCTCAAGAGTTACTGGAGttgcctctcctccttctctattCTATGTGTGTGCTGCTATTTATTTCTATTACCTCTATGAGGAACAGTGAccaagccctctctctctcttcatctctctatcaACTTCCACATAAGTCTTTACAAACAATTTCACAACCCTCCGTATTTTTCAACCTTAGAAGCCAGCTTCACAATGTCTAATTTTATTTTCCGAAGCAAAACAGGTTGGAGGAAACTCCAGTTTTTCTGTTTGCTCCCTGAGCTGCACCTTGGAATGCCATTCCGAGAGGTCCACATTCCGAAATCGGAATTGTCTTCTGAGTCAAAATATACCAGAATCTACTGCTGAAAGCTCGGCCTAACATGCTATATTTTTACTTTTCACTTCCTTCACCAGAACTGTTATGGCGGAGAGGCAAAGGATTGAGAAGAAGAGTTGGCTTGCATCTTGTCCATTGGTCAGATAAGAGTTGGACAGATTGTTGCCAGGTGTCTTTAGGTTGTAATAATGTAACACATTATgt

Function

GO: NA

KEGG:

id description
K15302 STXBP4, SYNIP; syntaxin-binding protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1933186 lncRNA upstream 24703 36409242 ~ 36412502 (+) True G1690176
TU1933152 lncRNA upstream 86645 36348843 ~ 36350560 (+) True G1690143
TU1933143 lncRNA upstream 91175 36344291 ~ 36346030 (+) True G1690139
TU1933137 lncRNA upstream 102269 36334117 ~ 36334936 (+) True G1690134
TU1933102 lncRNA upstream 151833 36285133 ~ 36285372 (+) True G1690106
TU1933249 lncRNA downstream 15695 36556600 ~ 36557674 (+) False G1690231
TU1933248 lncRNA downstream 16063 36556968 ~ 36557674 (+) True G1690231
TU1933250 lncRNA downstream 18654 36559559 ~ 36560687 (+) True G1690232
TU1933251 lncRNA downstream 19253 36560158 ~ 36560539 (+) True G1690233
TU1933252 lncRNA downstream 23994 36564899 ~ 36602975 (+) True G1690234
XR_005038403.1 mRNA upstream 13344 36423746 ~ 36423861 (+) True LOC118942466
XM_021576572.2 mRNA upstream 189693 36207378 ~ 36247512 (+) True LOC110499432
XM_021576571.2 mRNA upstream 257604 36173188 ~ 36179601 (+) True mrpl27
XM_021576569.2 mRNA upstream 266306 36161203 ~ 36170899 (+) True LOC110499428
XM_021576566.2 mRNA upstream 279423 36125765 ~ 36157782 (+) False LOC110499426
XM_036956295.1 mRNA downstream 12974 36553879 ~ 36564830 (+) False LOC110499435
XM_036955562.1 mRNA downstream 37821 36578726 ~ 36584090 (+) False LOC118942015
XM_036956296.1 mRNA downstream 154870 36695775 ~ 36809459 (+) False LOC110499541
XM_021576580.2 mRNA downstream 306398 36847303 ~ 36849071 (+) True LOC110499437
XR_005038405.1 mRNA downstream 362925 36903830 ~ 36903945 (+) True LOC118942468
TU1933112 other upstream 124507 36304939 ~ 36312698 (+) False G1690116
TU1933113 other upstream 124507 36304939 ~ 36312698 (+) True G1690116
TU1933095 other upstream 161262 36275482 ~ 36275943 (+) True G1690099
TU1933087 other upstream 172224 36264660 ~ 36264981 (+) False G1690092
TU1932658 other upstream 311815 36120616 ~ 36125390 (+) True G1689732
TU1933843 other downstream 337146 36878051 ~ 36880738 (+) True G1690753
TU1934277 other downstream 1001015 37541920 ~ 37543265 (+) True G1691142
TU1934332 other downstream 1109721 37650626 ~ 37654064 (+) True G1691189
TU1934415 other downstream 1263638 37804543 ~ 37809061 (+) True G1691267
TU1935199 other downstream 1681600 38222505 ~ 38222735 (+) True G1691990

Expression Profile