RNA id: TU1933171


Basic Information

Item Value
RNA id TU1933171
length 3045
lncRNA type read_through
GC content 0.42
exon number 3
gene id LOC110499435
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 36468873 ~ 36564830 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttcacagatcttcattgtaaagggtttaaacactgtttccaatgcttcttcaatgaaccataaacaattaatgaacatgcacctgtggaacggttgttaagacactaacagcttacagacggtaggcaattaaggtcacagttatgaaaactaaggacactaaagaggcctttctactgactctgaaaaacaacaaaagaaagatgcccagggtccctgctcatctgtgtgaacgtgccttaggcatgctgcaaggaggcattaggactgcagatgtgaccagggcaataaattgcaatgtccgtactgtgagacgcctaagatagcgctacagggagacaggacggacagctgattgttcacacagtggcagaccatgtgtaacaaacctacacaggatcggtacatccgaacatcacacctgcgggacaggtacaggatggcaacaataactgcccgagttacaccaggaatgcacaatccctccatcagtgctcagactgtccgcaataggctgagagaggctggactgagggcttgtaggcctgttgtaaggcaggtcctcaccagacatctccggaaacaacatcgcctatgggcacaaacccaccgttgctggaccagacaggactggcaaaaagtgcttcactgacaagtcgcggttttgtctcaccaggggtgattattgtcgaaggaatgagcattacacagaggcctgtactctggagcgggatcaatttggaggtggatttttttttgaattttttttattttacctttatttaaccaggcaagtcagttaagaacaaattcttattttcaatgacggcctgggaacagtgggttaactgcctgttcaggggcagaacgacggatggtccgtcatggtctggggcgatgtgtcacagcatcatcgtactgagcttgttgtcattgcaggcattctcaacgctgtgcgttacagggaagacatcctcctccctcatGCTACCACCCGATCAATGTCCTCCCTGCTCGAAAACTGACCCCACACACAACCTAGGAACTGCCTCCTACCATCTCACAACTCGTATCAAGAGATTGAAGGACAAAATTATTTAGGCTCAGTAGCACATTTCTACTCATTTTCTATACCATATATTTCATCCTCATCCATGTCTCTCTGTGATTGGCCCTTGTGAGGGAAAGCGGGTAGCTTTCTGTACTGTCTATGAGTAAGAAACGGAATGGGTTTATTTTATTTCCgatctgtgtgtgtttttcattTGGTTCTTTTCTTTCTGATGTAGTGTATCTGTCCACACATGGCTGTTGtgttattttctgtatttttcatGGCTTTTACTGAGGTGTTGTATTTTCTTATGAATGTGTATGTTGAATCTTATGTTACCtaccctcttccctctccctcttttctctggtTTCCATAGTGTAAATGTCAGTTGAGACGTCTCCCCCTGACGTTACCTGTCCCACTTTATCCACCTCCCTCCTCGTCTTCTTCTCCATCAGATAAATGCTGTTTGTAACGTGTAAACGATCACTGCCCTGCTCATACTTTAAAACCTCTCCCAGGCCTACATCCCGCTAGCCTGGGTGTCCGACTGTTTCTGCATTAACGCTACGCTACGTTATTGCCTTAGTGAGGCGGCAACATGTAGGATAAAGCAGAGACAGACCCGGCCGCCAGGCTATTACGATGTCAGCGTCATCGTTCTCATGTTCTTCTCATAGCAGTGTTATGTATAACAAAGGTTTGTTCCTAATTCTTTGGCACCAGATCACTCTGTTGGAACAGAACAAGTTCGGGAAGCTAAAGCCATAAGGCAGAATAAAGCTCTCGGTCTCCTCTCTACCAGGCCTACTGTCACACACGCATGAAACTGCCCTCGTTATTTTAGCACGTGCCCAATTTGCAATTGCTTTTATTAGTTGATATTGTGATATTTATGTCTTTACATAAAATCAGGCATGATTCTATTTGTTGTTCAAGCATTCAAATGTGAACATTATCAGCATCTGTGTCGTGAGGCAACAGTTTTTATTGTGTTCTTTTTCTTTTCTCAGGCTTGACTTCTCTGTGTCATGCTCTTGTCTACAGAGGTACGGTTGTCCCTATTGGGACTGCCTCTCAGTCCTGCCCAGATTGAAAGAATTCCTGCTGAGAATGAGGCTGTCCTGATATTAACACCGTACAGATGCTCTCCCCATGACCCAATGAGAGATGAATGTAACAGatgtactactgtatataacaaaTGAACACAGTGTACGTTGGGCAAATGAATGGTGTTGCCTATACAGGACTGTGGAATATACCCACATCACTTTATATATCTCTTTACTACAGACCAAAAGATGACAGTATAGAAAGGATATGTTATTATATGAAAGGTTTTGTTGTTTTTACAAAgatcttgtttttgtacagtATTTTTTTCCGTACATAAATCTCCTGTGTATATAAAAAAATGAACTATGTATATTCAGAACTTGTTCATCTCTACCGATGCTGTTTCTCAGATACTTTGCATGGGCATTACTCAAGACAACCTTACAAATGAAAGTGACAGGCTGTTTTACAGACCATATGAAAGTGGCAGGCTGTTTTACAGACCATATGAAAGTGTAGTCAGTCTCACTCTTTAACCCCTCACGCCCACCACAGACAAACTCAAAACGCTTTGCTGTTTTCGTCTTGAAAAGTTGTGTATGTCTTGTTGCGTTGTTTCTTTGCTTTGCAGAAGCTGAAGCTCTGTAGTCTAAGAGGAAGATTGATATTGGCATCCCTTTTTAAATTCTTATTTGTATTGTATGTAGTTTTGGTTTTTAGAAGAAAGTCAAATCCCAACAACAAGCGCGTGTGTTATGTCTCTTCTTAATTTCCCCCTTTTGTGTGATTATTCCTACTTTCCTCTTGGTGTAGGGTTCACTAGACAGAATACTTATAAGCTGATATGTTAAAAATCTTGTGTTTTTCCAAGTATTCCTCCCttgtcttttgtttgtttttcattaTCAAAATAAAACTGTTGAAATCA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1933186 lncRNA upstream 56371 36409242 ~ 36412502 (+) True G1690176
TU1933152 lncRNA upstream 118313 36348843 ~ 36350560 (+) True G1690143
TU1933143 lncRNA upstream 122843 36344291 ~ 36346030 (+) True G1690139
TU1933137 lncRNA upstream 133937 36334117 ~ 36334936 (+) True G1690134
TU1933102 lncRNA upstream 183501 36285133 ~ 36285372 (+) True G1690106
TU1933252 lncRNA downstream 69 36564899 ~ 36602975 (+) True G1690234
TU1933256 lncRNA downstream 2717 36567547 ~ 36569470 (+) True G1690237
TU1933264 lncRNA downstream 18712 36583542 ~ 36592198 (+) True LOC118942015
TU1933551 lncRNA downstream 46506 36611336 ~ 36611608 (+) True G1690486
TU1933564 lncRNA downstream 53584 36618414 ~ 36618881 (+) True G1690499
XR_005038403.1 mRNA upstream 45012 36423746 ~ 36423861 (+) True LOC118942466
XM_021576572.2 mRNA upstream 221361 36207378 ~ 36247512 (+) True LOC110499432
XM_021576571.2 mRNA upstream 289272 36173188 ~ 36179601 (+) True mrpl27
XM_021576569.2 mRNA upstream 297974 36161203 ~ 36170899 (+) True LOC110499428
XM_021576566.2 mRNA upstream 311091 36125765 ~ 36157782 (+) False LOC110499426
XM_036955562.1 mRNA downstream 13896 36578726 ~ 36584090 (+) False LOC118942015
XM_036956296.1 mRNA downstream 130945 36695775 ~ 36809459 (+) False LOC110499541
XM_021576580.2 mRNA downstream 282473 36847303 ~ 36849071 (+) True LOC110499437
XR_005038405.1 mRNA downstream 339000 36903830 ~ 36903945 (+) True LOC118942468
XR_005038001.1 mRNA downstream 341820 36906650 ~ 36909570 (+) False LOC118942068
TU1933112 other upstream 156175 36304939 ~ 36312698 (+) False G1690116
TU1933113 other upstream 156175 36304939 ~ 36312698 (+) True G1690116
TU1933095 other upstream 192930 36275482 ~ 36275943 (+) True G1690099
TU1933087 other upstream 203892 36264660 ~ 36264981 (+) False G1690092
TU1932658 other upstream 343483 36120616 ~ 36125390 (+) True G1689732
TU1933843 other downstream 313221 36878051 ~ 36880738 (+) True G1690753
TU1934277 other downstream 977090 37541920 ~ 37543265 (+) True G1691142
TU1934332 other downstream 1085796 37650626 ~ 37654064 (+) True G1691189
TU1934415 other downstream 1239713 37804543 ~ 37809061 (+) True G1691267
TU1935199 other downstream 1657675 38222505 ~ 38222735 (+) True G1691990

Expression Profile