RNA id: TU1933942


Basic Information

Item Value
RNA id TU1933942
length 1360
RNA type TUCP
GC content 0.59
exon number 5
gene id LOC110499438
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 36891846 ~ 36896982 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgtAGCAATGGAGGGGGTAACTGTAGGGCACGTATTTGACGCCGAATGCATCCTCAACAAACGTCCACGAAAGGGGAAGTTTGAGTATTTGGTGAAGTGGAGAGGGTGGTCGTCCAAACATAACAGTTGGGAGCCTGAAGAGAATATTCTGGACCCCAGATTACTGGCTGCCTTCCACAAGAGAGCGCAAGAGAGGGAGCTACTCTTCCGTAAGAGAGGGAAGAGGCCAAGGGGACGTCCACGGAAAATTCTGGAACCAGAACCAACTGAAACCAAATCCGaccgctcctcctcctcctcttcatccggcctgtcctcctctccctcctcttcctcagaagaagaagaagaagaagaggaagaccacaggaagAAGGCCAAACCAGGTCCTCGCCTCCGCAACCTCTACCCCGTCCCCCAGAAGAGGCCCCAGATTGTTGTGGCCAAAAATGAGCCCGTCCGGAAAAAGCGCGGGAGAAAACCGCTGCTCCCCGAGCTGAGGGCTTTGAGACAGGCAAAGACCCGGCCGCCCCTCCCGCCCCCTTCTCCTTCTCGCCACCAGCAGGTCCTCAGGCCCCCCCGCGAGCCCTTCAAAGAGGAACCCCGAGGGGGGGTGAAGAAGCCTCTACAGCCAGCCAGTTTCACCTACACTGGCCTGAGCTCTAGCCGGGGCTCCAGAGATGAGGTGGCACACCAGGTGGCTGCTGGAGGTGCCTTCTACCAGGCAGGGGCCTCCAAACCTGGGCCGCTGAACTCCATTTGGTCAGGTCGCTCCATGTCGACCAACACCCCCACCccatcctctctatcctcctcttcctctctcagcaGACCTCCCCCGCCTTACAGTAAGGGCTGGTCAGATCTGAagcgctccctctctgtctctgacgcCGGCAGCAGCAATGGCAGAGCAGAAGGGTTCAAGGTGGCTTCCTCTCTAAAACCAGGGATGTCTACATCCACACTCTGTCTCCACAGCTCCAAGACCTCCAGTGGGTGTGGGGGCTCTTCAACGGCATGTAGCCCAGCTCAGCGCTTCCCAGCTGGGCAGAGGAGGCAGCAGGAGGGCCCAGGAGGTCAGGCAGGGATGGTGGTTCAGCAGCAGGGAGCCAagcccccctcctctacccctccctcggCCAGAGACCGCATCAGTCAGGCCCTCAGCCTCCGAGCTCTCAACCTGCAGAGTGTCAAAAGAATCGCGCCCGGCAATGGTCTCCAGGGAAACGGGACCTCCGGCACCACTGGAGTTGCAGTTTCGAGGTTGAGCCTGAGAAGCAGTGCCAGCCCGGCAGGAAAAAGAGCAGGGGGGAGCATTAAAGAGACACACACCTCGTCTGGGCTGAACCAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1933825 lncRNA downstream 44972 36847297 ~ 36848575 (-) True G1690738
TU1933802 lncRNA downstream 55929 36836972 ~ 36837618 (-) True G1690727
TU1933785 lncRNA downstream 65855 36827439 ~ 36827692 (-) True G1690710
TU1933770 lncRNA downstream 79635 36811931 ~ 36813912 (-) True G1690695
TU1933769 lncRNA downstream 89438 36803821 ~ 36804109 (-) True G1690694
TU1933976 lncRNA upstream 48315 36944521 ~ 36944875 (-) True G1690859
TU1933995 lncRNA upstream 80791 36976997 ~ 36977343 (-) True G1690877
TU1933998 lncRNA upstream 86323 36982529 ~ 36982995 (-) True G1690880
TU1933999 lncRNA upstream 87462 36983668 ~ 36983905 (-) True G1690881
TU1934000 lncRNA upstream 87844 36984050 ~ 36984278 (-) True G1690882
XM_021576579.2 mRNA downstream 300783 36583534 ~ 36592764 (-) True LOC110499436
XM_036956292.1 mRNA downstream 505875 36344254 ~ 36387672 (-) False LOC110499433
XM_036956293.1 mRNA downstream 505875 36344254 ~ 36387672 (-) True LOC110499433
XM_036956291.1 mRNA downstream 505878 36344254 ~ 36387669 (-) False LOC110499433
XM_036956287.1 mRNA downstream 557095 36259840 ~ 36336452 (-) False LOC110499540
XM_021576582.2 mRNA upstream 23972 36920178 ~ 36935086 (-) True LOC110499441
XR_005038406.1 mRNA upstream 50060 36946266 ~ 36946381 (-) True LOC118942469
XM_036956298.1 mRNA upstream 159747 37055953 ~ 37197139 (-) False LOC110499443
XM_036956299.1 mRNA upstream 181838 37078044 ~ 37197139 (-) False LOC110499443
XM_036956300.1 mRNA upstream 181838 37078044 ~ 37197149 (-) True LOC110499443
TU1933771 other downstream 83404 36809699 ~ 36810143 (-) True G1690696
TU1933722 other downstream 190106 36702546 ~ 36703441 (-) True G1690649
TU1933425 other downstream 472947 36419716 ~ 36420600 (-) True G1690367
TU1932968 other downstream 768149 36120507 ~ 36125398 (-) False LOC110499427
TU1934589 other upstream 342621 37238827 ~ 37239310 (-) True G1691432
TU1935552 other upstream 1586689 38482895 ~ 38485362 (-) True G1692288
TU1935564 other upstream 1593344 38489550 ~ 38492040 (-) True oxld1
TU1935682 other upstream 1671174 38567380 ~ 38568189 (-) True G1692405
TU1936328 other upstream 2107594 39003800 ~ 39004440 (-) True LOC110499457

Expression Profile