RNA id: XR_005038405.1


Basic Information

Item Value
RNA id XR_005038405.1
length 116
RNA type mRNA
GC content 0.41
exon number 1
gene id LOC118942468
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 36903830 ~ 36903945 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acactctggtttctcttcagaTCGCATAAatctttcgccttttactaaagatttccgtggagaggaacattaTGAGTATCAACTAATTTTTTGATGCCCGGCTTCACGGTTGGGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1933848 lncRNA upstream 18832 36883996 ~ 36884998 (+) True G1690757
TU1933834 lncRNA upstream 43404 36858779 ~ 36860426 (+) True G1690747
TU1933597 lncRNA upstream 90247 36811965 ~ 36813583 (+) True G1690531
TU1933599 lncRNA upstream 94443 36807746 ~ 36809387 (+) True LOC110499541
TU1933598 lncRNA upstream 95358 36807665 ~ 36808472 (+) False LOC110499541
TU1933872 lncRNA downstream 2991 36906936 ~ 36916416 (+) False G1690772
TU1933871 lncRNA downstream 4464 36908409 ~ 36916416 (+) True G1690772
TU1933905 lncRNA downstream 51903 36955848 ~ 36957193 (+) True G1690801
TU1933915 lncRNA downstream 69748 36973693 ~ 36973911 (+) True G1690810
TU1933909 lncRNA downstream 82322 36986267 ~ 36986774 (+) True G1690804
XM_021576580.2 mRNA upstream 54759 36847303 ~ 36849071 (+) True LOC110499437
XM_036956296.1 mRNA upstream 94371 36695775 ~ 36809459 (+) False LOC110499541
XM_036955562.1 mRNA upstream 319740 36578726 ~ 36584090 (+) False LOC118942015
XM_036956295.1 mRNA upstream 339000 36553879 ~ 36564830 (+) False LOC110499435
XM_036956294.1 mRNA upstream 362925 36437205 ~ 36540905 (+) True LOC110499434
XR_005038001.1 mRNA downstream 2705 36906650 ~ 36909570 (+) False LOC118942068
XR_005038002.1 mRNA downstream 3166 36907111 ~ 36909570 (+) True LOC118942068
XR_002469960.2 mRNA downstream 10379 36914324 ~ 36916187 (+) True LOC110499440
XR_005038404.1 mRNA downstream 14591 36918536 ~ 36918651 (+) True LOC118942467
XM_021576583.2 mRNA downstream 61232 36965177 ~ 36985560 (+) True LOC110499442
TU1933843 other upstream 23092 36878051 ~ 36880738 (+) True G1690753
TU1933112 other upstream 591132 36304939 ~ 36312698 (+) False G1690116
TU1933113 other upstream 591132 36304939 ~ 36312698 (+) True G1690116
TU1933095 other upstream 627887 36275482 ~ 36275943 (+) True G1690099
TU1933087 other upstream 638849 36264660 ~ 36264981 (+) False G1690092
TU1934277 other downstream 637975 37541920 ~ 37543265 (+) True G1691142
TU1934332 other downstream 746681 37650626 ~ 37654064 (+) True G1691189
TU1934415 other downstream 900598 37804543 ~ 37809061 (+) True G1691267
TU1935199 other downstream 1318560 38222505 ~ 38222735 (+) True G1691990
TU1935201 other downstream 1324070 38228015 ~ 38228551 (+) True G1691992

Expression Profile