RNA id: XM_036956302.1


Basic Information

Item Value
RNA id XM_036956302.1
length 3937
RNA type mRNA
GC content 0.48
exon number 15
gene id LOC110499447
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 38083895 ~ 38203970 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGATCCCTTTAAAATGGCAAGCAGCTATGATCAGGCTGCCTGCGTTCTCTGTCAGCGGGTGGTATAGCCTCCAGACTGTGTGGGCGCAGTTGAAAAGTTTCTTATAAAAGCGATGATTCCGGAGTCTCGTATTACGCGCGTCCCCCCCCTCTGTAACAATTGTTTCTTACTACGATTCCTTCCACCTACTCCGTTTCTCCTTCGTAGTATTTCTTCGAAAAGCTCCCGTCACTAAAGGAAATCTGGTCTATGGTTTTGGCTGAAGAAGGTTCCACGATGTCTCGGACTGACGAAGTACACCGTATAACGGAGAATGTCTATAAGTCCATTATGGAGCAATTCAACCCGTGCTTGCGGAACTTCGTGGCCATGGGGAAGAGTTACGAGAAGGCCCTATCCAGTGTCACATTTGCTGCAAAGGGCTACTTCGAGGCACTGGTGAGGATGGGAGAGATGGCCAGCGAAAGTCAAGGCTCTAAGGATCTTGAAGAGGCAGCATGGGATGTGCTGTTTCAGATGGCTGAGGTCCACAGGCAGATCCAGATACAGCTTGAAGATATGcTGAAGTCGTTCCACAATGAGCTTCTAACCGAGCTGGAGAAGAAGGTGGAGCTGGATGCACGCTACCTGAATGCGGCTCTGAAGAAGTACCAGATGGAGCacaagagtaaaggagagagtcTGGAGAAGTGTCAGGCAGAACTGAAGAAGCTCCGCAGGAAGAGCCAGGGCAGCAAGAACCCTTCCAAGTACGGAGACAAGGAGATGCAGtaTGTTGAGACCATTGGCAGCAAGCAGAGTGACCTGGACCAGTACACAGCAGAGGGCTACAAGAGTGCgctgtcagaggagaggaggaggtactgtTTCCTGGTGGACAGACAGTGTGCCGTGGCCAAGAACAGCAGTTCCTTCCATAGCAAGGGTAAGGACCTGCTAGCCCAGAAGATCCCAGCATGGCAGCAGGCGTGTGCTGACCCTACCAAGCTGCCTGACCGTGCCATGCTCCTGGCTCAGCAGATGACCTCTACAGGGGGTTCCCTGGGATCCGTCTCCCACACCCACCATGGTTCAAAGGGCAACCTGCTCATCTCTGACCCCATTCCCGGGGCCAAACCCCTGCCTGTACCCCCCGAGCTGGCTGCCCTCATGGGCCAACAGCGTATAATGGGACCAGGAGGAGTGGATGGAGGGATGCCCATGATGAATGGAACGACAGGGGCCCACGGAGgagcaggagggggaggaggggaggactaCCAACACTGGATGGAAGGGAAGATGGCTCAGGCCCAGGcccaggctcaggctcaggcccAAGCTCAGGCCCAAGCTCAGGCCCAAGCTCAGGCCCAAGCTCAGGCCCAGCAGGCTCAGGCCTCCTCCCAGGCCCAGCACCTTTCCCAGCCCCACAGACAGGGCAGTGAGGTCTACTCCAACACCCTGCCTGTCCGTAAGAACGCCCCAGCCAAGAGCAACACCACCATGGTTCCAGAGACCCGGACCCTGCCCCGGTCCAGCTCCATGGCTGTAGGGCTGGAGAAGAACGGACGCACCCGTGTCCAGGCCGTTTTCTCCCATGCAGCGGGGGACAACAGCACCTTGCTCAGCTTCTCTGAAGGAGATGTCATCACCCTGTTGGTGCCGGAGGCCCGCGACGGATGGCACTATGGAGAGAACGAAAAGAACAACATGCGTGGCTGGTTCCCTTTCTCCTACACACGTGTCATCCCCGAGACTGACAGCAACAAACTACGAGTCAACAATCTCCACCATGGTAAGAGCAGCAGCACGGGGAACctgttggagagagaggacatggcaGGTGTCCCTCCCCCAGACTACGGCATGTCATCTCGCCTGCTGGCACAGAGCATGCAGAGCGCAGCCATGGCACACAGCAGCAGACGGCAACAACGGCCATATAGCGTGGCAGGGCCGGGCTTCTCAcagCAAGGACTTGAACAGTATGAGCAATGTTTTCCTAAGAGTTCTGAAGGGGGAACAGTTACGAAATTGATTTCGACAGTGTGAgaaggcacagacagacagacagacacagactcgGCTTGCTGCTGCTGCAATAAGACTTACTGACTGCCAGGCACCTCTGCAATCCCTCATCATCCGCCCTCCTCACCAGTCCCTCtaaccctcacccctcctctctctaacccacCACAACATTCCCCTCTCCTCCGGCGCTTACcagtctacccccccccccaattccaCCAGGGGAAAGCCTTGTCTACCCCCCCCCAATTCCACCAAGGAATTGTCTATCCTCTATCTTCCGTTCCTTCCTGCCTCTCTCACCTGGTACTTTCACACTACTGGGAAGTTCCCAGTACCCACCGCTATTGGACCGACACCATCATGGCACCATCCAAATCATTGGAATGATGGACTGAGGATGAAAATAAGGAAAATCTTTTGCTTGTCTTTCATGCATGTCTTCTCTATTCAATGGGGatttatttctctgtaaacatatataataaaatagtaaaaaataattgaaaataaaaatctttAACATTCTACACCAGATTGAAGGTTGAAGTATTTATAATATCATTGTAAATCAAAATGGTAATCCCAAAGGGGATTGTTTTAGTCATGTACAGATGATGATGAATTATCAAAACAAATGTCAAGTCAAAACTATACTGGGTCTTCTTCTTATCCGTAAGAGAATAACGTTACTTTATAGACTGTGAGGTTCTTCTGATAACGTCTTAACGTTCCTCTTCAAATGACaggggtatgtatgtatgtatcacaCGTAGTGAAATAacttaaataaatgtaaatgtttttggtTTTTTTCTCATTATTATAACTTATTGGGGGGCATCCGCCCAATGAATGGATGACCATGAATGTGTACTGTACATTAATGTACCATAAAGTAAAATATATGATTTAGTATATCTCTATTGATTATCAGCGGATCAAAACGCACCTTAAAGACCCAATACTCTGTATGATTTGTGACGTTCTCTGtaaacatgttgttgttgttgttgttattattagccaCAGAGTCATGTTTTATGATGTCAGAGGTCACctgacaggctgtgtgaaggacTTTTACTCTGATAATCAAATGCTTGTGGATTTCTGAATAtcttttttatttgtttgtttgtctttttAATATAAATATACACAAGGCTGAACGGAGAAAACAACCGTCCCTGAAAGAAAGAGTTGCGAGGCTCTGAGTAGGATTACTGTTCAGGCATTCATGCATGAAAGAAGAAACGACTGATAGCCTGTGCACCTCGGCCATCCCACAACAAAGGTGCTACATTTCATGGTGTGGAAACCATGTTGCCAAAGCAACAGCCTCTGTTCTCATCCCCTCCAATCAGTGCTGCCCGGATGCCATAATTGTGACTACACCGTGCCTCTCTTGCTGTGCACACAATAGGAAGATGAGTTGTGACTAACATTTAATAAATGTTTGCTAGCTATAAACCATTCAATCTAACCGTTGCGTAATTACCATATATCACAGAAATAATTGGTCATTCTGATCTGCACACATATAGTGTATGCAGAAATGTTGGAGTGACTGAACGGATGCCAACAGCACAACTGCAAATTATGGCAATAATTGGATCAATAGCCATTTAGAGCGTTGTAATAAATAGCATTTTGTCACATGTCACTGTAACTCTTGCTATTGTGACATATATTTGCAGCACATATGAAATGAACAACTGTGCGACCtcgggggggaaaaaaaaaaaaggacagGAGTTGATTTGTTATTGTGACTTCATTCAGCCTTCTTGTACTTTTGGTCTTTGTATTAAAATAAAGGGAATGGGGGAAAAAGCATGATATGTGAGGCAGGATAAAACATGTCTGTTTATTTCCATGTGCTGAATAAAGAAAGACGCTAGTCTGTCTGCTTGTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1935108 lncRNA upstream 9237 38074384 ~ 38074658 (+) True G1691908
TU1935095 lncRNA upstream 32966 38049859 ~ 38050929 (+) True G1691896
TU1935090 lncRNA upstream 44854 38038697 ~ 38039041 (+) True G1691891
TU1935081 lncRNA upstream 56739 38026775 ~ 38027156 (+) True G1691882
TU1935070 lncRNA upstream 65196 38017808 ~ 38018699 (+) True G1691871
TU1935196 lncRNA downstream 12921 38216891 ~ 38218610 (+) False G1691989
TU1935197 lncRNA downstream 12921 38216891 ~ 38218610 (+) False G1691989
TU1935198 lncRNA downstream 12921 38216891 ~ 38218610 (+) True G1691989
TU1935119 lncRNA downstream 25856 38229826 ~ 38230188 (+) True G1691915
TU1935214 lncRNA downstream 39342 38243312 ~ 38244355 (+) True G1692003
XM_021576585.2 mRNA upstream 2625 38075973 ~ 38081270 (+) True LOC110499446
XM_021576583.2 mRNA upstream 1098335 36965177 ~ 36985560 (+) True LOC110499442
XR_005038404.1 mRNA upstream 1165244 36918536 ~ 36918651 (+) True LOC118942467
XR_002469960.2 mRNA upstream 1167708 36914324 ~ 36916187 (+) True LOC110499440
XR_005038001.1 mRNA upstream 1174325 36906650 ~ 36909570 (+) False LOC118942068
XR_005038003.1 mRNA downstream 376765 38580735 ~ 38594305 (+) True LOC110499600
XM_036956317.1 mRNA downstream 390849 38594819 ~ 38638772 (+) False LOC110499544
XM_036956318.1 mRNA downstream 403901 38607871 ~ 38638772 (+) False LOC110499544
XM_036955563.1 mRNA downstream 435625 38639595 ~ 38640649 (+) True LOC118942016
XM_021576600.2 mRNA downstream 853066 39057036 ~ 39068138 (+) False LOC110499463
TU1934415 other upstream 274834 37804543 ~ 37809061 (+) True G1691267
TU1934332 other upstream 429831 37650626 ~ 37654064 (+) True G1691189
TU1934277 other upstream 540630 37541920 ~ 37543265 (+) True G1691142
TU1933843 other upstream 1203157 36878051 ~ 36880738 (+) True G1690753
TU1933113 other upstream 1771197 36304939 ~ 36312698 (+) True G1690116
TU1935199 other downstream 18535 38222505 ~ 38222735 (+) True G1691990
TU1935201 other downstream 24045 38228015 ~ 38228551 (+) True G1691992
TU1935683 other downstream 364299 38568269 ~ 38569446 (+) True G1692406
TU1935894 other downstream 506981 38710951 ~ 38712291 (+) True G1692568
TU1936048 other downstream 635964 38839934 ~ 38840271 (+) True G1692702

Expression Profile