RNA id: XM_036956321.1


Basic Information

Item Value
RNA id XM_036956321.1
length 1693
RNA type mRNA
GC content 0.55
exon number 6
gene id LOC110499458
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 39006786 ~ 39026027 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aggaggagaagaggcgaagtggggaagaggagaggaagagaagagaagtggaggaggagaggaggagaaggggaagagaaggggaggaggggagtacaAACCACAGATTGTATCAGAAGGAGAAAAGGAAGGTGAGGACCGTCGGAGTGGTTGTAAAGGAGCTGAACTTCTCAGAAGACACTTCCTGTCATGTTTACTTCAGTCCGGACCCTTTGTGTTCAGGACACAATGTCCAGGCTACTATCCTCAGAGTCTGGCCGCTGCCTATGAGTCCGTCCATACAGCCGCTGCATACACCGAGCACTGTCGCTTGTACCGTACTTTGTTGTTGGTCAGGAGGGAGGCACAAAGGGAGCTGAAATGCAGAATGTAccggaggaatggagggaagaacagagggctggaggaggaggagaggtggatgcTAAAccctgggagggtagagaggcCTTATTCCAAATAAACACTGTTAACTCCAAACAGGATatggacagagggaaagagaatggAGAGACCGGCgttaaggagaggaggaaggagaatgtAGAGATGATGAACGAAGGGGGAAAGGGAACAGACAAAGAGTCCCTGATGATGGAGCTGACCCGTTTGGTTCAGAAGACAGTGAAGGAGAGTAGCTGGTGGGAGAGGCGAGGCATCGACATCACTATCCTGGTCCTGGCCTTTCTCTTGTTACCTCCAGCCTTTCTGCTGCTGGGCTCATCCCAGATCCTGGTGTTTGTCCTGGGCATGGTGCTGATGGGGGTGTCCCATGCTGTCATTTCCATTAAGGGAACCCACCTGGCCAGCCACGGATCGCTGAGCGAGTCCCCCGCCTGGGCCGAGTTCTGGGCTGTGTTCTTCATAGAGGTGTGTGGGTCGTTCACAGCAAGGGCAGGTGTAACAGGCCACATTAAGATGCATCATGCCCACACCAACGTGATCGGCCTGGGTGACTCCAGCACCTGGAAGATACCCTGTCTACCCCGGAGTGTCTACCTGTTCATCGCACCCCTGGCTATACCCATTATCACACCTCTGGTGGCACTAGGTCAGCTGAAGGACCACTCGGTGAGCCAGGCCCTGAGGACAGTCCTGATGGTGTTCCTGGGGTTCTACTCTCAACACTGGCTACTGATGCATGTGTCTGGGTTCCAGTGTCCGTACAGCAGCCTCCTCTGCATGCTGCTCTGCAGGGCCATGTTCTCTATACCTTACATACACGTTAACATCTTCCAGCACATCGGCCTGTCTATGTTCTCCCCGACCCGCCGGCCCAAGAGGATTTACCAGATGACCCACGGGGTTCTGAACCTTCCCCGGAACCCCCTGCTGGACTGGACCTTCGGACACTCCCTCATCAACTGTCACGTGGAACACCACCTGTTCCCCTTTCTCTCGGACAACATGTGTCTCAAGgtaaAGCCCATCGTGTCCCAGTATCTAAAGGAGAAGGCGCTTCCATACCAGGAAGACACATACCTCTCCCGTCTGCAGCTCTTCTTTCACAAGTACCAGGAGCTCATGGTGTTCGCCCCGCCCATCACCGAGCTGGTGGGGGTGCAATgatggaggggggaaggagagagggagacagagaaagggaaacagagagagggaaacagagagagggagacagagagcgggagacagagagagggaaacagagagagggagacagagagagggaaac

Function

GO: NA

KEGG:

id description
K12419 FADS6; fatty acid desaturase 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1936329 lncRNA downstream 21138 38985103 ~ 38985648 (-) True G1692957
TU1936322 lncRNA downstream 38110 38967418 ~ 38968676 (-) True G1692951
TU1936321 lncRNA downstream 45077 38961450 ~ 38961709 (-) True G1692950
TU1936320 lncRNA downstream 45436 38961108 ~ 38961350 (-) True G1692949
TU1936308 lncRNA downstream 69973 38936467 ~ 38936813 (-) True G1692937
TU1936364 lncRNA upstream 42157 39068184 ~ 39069100 (-) True G1692977
TU1936402 lncRNA upstream 82017 39108044 ~ 39111247 (-) True G1693013
TU1936411 lncRNA upstream 91256 39117283 ~ 39117780 (-) True G1693021
TU1936412 lncRNA upstream 92289 39118316 ~ 39118826 (-) False G1693022
TU1936413 lncRNA upstream 92289 39118316 ~ 39118826 (-) False G1693022
XM_036956319.1 mRNA downstream 188 38982955 ~ 39006598 (-) False LOC110499457
XM_036956320.1 mRNA downstream 188 38982955 ~ 39006598 (-) False LOC110499457
XM_021576596.2 mRNA downstream 34735 38965588 ~ 38972051 (-) True tvp23b
XM_021576593.2 mRNA downstream 205742 38782027 ~ 38801044 (-) True LOC110499456
XM_021576592.2 mRNA downstream 244185 38753757 ~ 38762601 (-) False kcnj2a
XR_005038004.1 mRNA upstream 5989 39032016 ~ 39055082 (-) False LOC110499462
XM_021576598.2 mRNA upstream 7543 39033570 ~ 39055082 (-) True LOC110499462
XM_036956323.1 mRNA upstream 44016 39070043 ~ 39101170 (-) False LOC110499545
XM_036956324.1 mRNA upstream 44016 39070043 ~ 39101170 (-) False LOC110499545
XM_036956325.1 mRNA upstream 44016 39070043 ~ 39101170 (-) False LOC110499545
TU1936328 other downstream 2346 39003800 ~ 39004440 (-) True LOC110499457
TU1935682 other downstream 438597 38567380 ~ 38568189 (-) True G1692405
TU1935564 other downstream 514746 38489550 ~ 38492040 (-) True oxld1
TU1935552 other downstream 521424 38482895 ~ 38485362 (-) True G1692288
TU1934589 other downstream 1767476 37238827 ~ 37239310 (-) True G1691432
TU1936358 other upstream 48051 39074078 ~ 39074834 (-) True LOC110499545
TU1936491 other upstream 238274 39264301 ~ 39264691 (-) True G1693092
TU1936860 other upstream 437403 39463430 ~ 39490078 (-) True G1693393
TU1936964 other upstream 587330 39613357 ~ 39614826 (-) True G1693485
TU1937007 other upstream 639237 39665264 ~ 39668240 (-) False LOC110499466

Expression Profile