RNA id: TCONS_00005988


Basic Information

Item Value
RNA id TCONS_00005988
length 1970
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id XLOC_002546
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 5221915 ~ 5223942 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATTGGgtcaaaaatgaaataataaaccCAATTTTTCACTGTTTATGGGAATACTGACAAATATTTGACGTTTGTCTTATAGAATTGAAATGTTATGGCATCGTTAATACTGGATTTATGAAGATTTCACAAGAAAAAATTGTTTTACATCTGTTTTAATCTTGACCTGAGTAAATCACTGAAGTTGACAGTATGTAACCCACAGCTAAATGGATGAAAATAGCTGAAAATCTAATTAAACTGTCTGTTTAATTGTGAGTCAAAGGTCAAATCCCACAAAAACAAGCCGTTTCTGCAATTCAAAGTGTATAATTGCATAATGATATTATTTTTCAATGTTCAACACaccttaaaggaacagtttactccaaaaatgaaaattcctgCACTGTTTCCTCAATCAAGTGCTTAACTTTAaagagtttctttcatctgttaaaaacaaaatgagaTATTCTGGATCATTTTtgaacactatggaagtcaatggctgcttttcttgatttttcagCACAtatttttgtgctcaacagaataaagaaactcaaagcggtttgaaacaagtagagaATCAgcaaatgatgactgaattttcattttggggtaatAAGGGtgggatttttttaaatagtcgaACATCTCAATGCAAATATCTATTTTCTAATTTTAAATATAGTCAACATCTTTTTCTTGGTGTGAAATACAATCAGTACTTGACAAGTTTCATGAGGTTCAACGTGACGTTTTCGAAAGAATGCAACAGTGTCTGTTAAAAGcaaaacatatgttttaaaacagcttttgAGTGAATCTACAACAGTAGGCAACAGAGAGGAAGGACCCCAGAATTCAGTCTGTGACTATAACATTGAGGCTTTTCAATAAATAAGgtacactgtataaaaaatctgttattttattttttctggcaCCTAGGGTgccgtaataaaaaaaaaaatattggcttttaaattacagacatttacagtaaaataacagactttaaatgacagaaatttaccagaaatttaaatttaaggaaatttctgtaatttaaagtctgttattttacagtaaatgtctgtaatttaacggccgttattttacgttgACGTTTTGTTTTCCGGCACTCTAGCTGCACAGTACACACagattttacagtgtacctgtttaatattttcataatatttcatTTCAGTAACTATCAGATCAGATCAATTAGTTGGGCTATATAAGCAGGTAATATATTTCTGTTGGccttgtttattttagtatggAGCCCTTTAGGGGACGTGGTAATCACATTTTTACAAGTAGATAGTGCTCTGGGATATTTTTTTACCATGAGGTAGCGCTCtgggcaagtttttttttaaacagcagatataACTCTGGGAtattttttaccagcagatggcgctctgggcaagatttttttaaacagcagatgtaaCTCTGGGAtattttttaccagcagatggcaaTCTGggcaatattttttaaacaactgaTGTAACTCCGGgatagtttttaccagcagatgTAGCGCTCTGGgatagtttttaccagcagatggcgctctgggaTAGTTTTTACCAGAAGATGGCGCTCTGGGATAGTTTTTACCAGAAGATGGCGCTCTGGGATAATTTTTACCGGCAGATGGGCTAGTTTTTACAATCAGATGCTGCTCTGGGATATTGTTTACCAGCAGATGGGCTCATTTCTACaagcagatggtgctctgggTTAGTTTATACCAGGAGATGTAACTTTGggatagtttttaaacagcagatgtaaCTCTGGGCTAGTTTATACCAGAAGATtgtgctctgggctagtttataccaggagatggtgctctgggctagtttatACCAGGAGATGGCACTGTGGgatagtttttaccagcagatggtgctctaggctattttataccagcagatggcactctgtgaTCGTTTAAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00004741 lncRNA downstream 163092 5052862 ~ 5058823 (-) True XLOC_002544
TCONS_00005986 lncRNA downstream 197630 5018558 ~ 5024285 (-) False XLOC_002543
TCONS_00004732 lncRNA downstream 211640 5003992 ~ 5010275 (-) False XLOC_002543
TCONS_00005746 lncRNA downstream 299864 4919323 ~ 4922051 (-) True XLOC_002540
TCONS_00005985 lncRNA downstream 403309 4812304 ~ 4818606 (-) True XLOC_002539
TCONS_00004744 lncRNA upstream 301451 5525393 ~ 5527364 (-) True XLOC_002547
TCONS_00005989 lncRNA upstream 564678 5788620 ~ 5790151 (-) False XLOC_002550
TCONS_00005990 lncRNA upstream 630692 5854634 ~ 5855125 (-) True XLOC_002552
TCONS_00005991 lncRNA upstream 812939 6036881 ~ 6037746 (-) True XLOC_002555
TCONS_00005992 lncRNA upstream 1165327 6389269 ~ 6409797 (-) True XLOC_002556
TCONS_00004742 mRNA downstream 86127 5092511 ~ 5135788 (-) False XLOC_002545
TCONS_00004743 mRNA downstream 86127 5094123 ~ 5135788 (-) True XLOC_002545
TCONS_00004739 mRNA downstream 163092 5041977 ~ 5058823 (-) False XLOC_002544
TCONS_00004740 mRNA downstream 168326 5042269 ~ 5053589 (-) False XLOC_002544
TCONS_00004735 mRNA downstream 197395 5017218 ~ 5024520 (-) False XLOC_002543
TCONS_00004745 mRNA upstream 309901 5533843 ~ 5568379 (-) False XLOC_002548
TCONS_00004746 mRNA upstream 312190 5536132 ~ 5581487 (-) False XLOC_002548
TCONS_00004747 mRNA upstream 312824 5536766 ~ 5568379 (-) True XLOC_002548
TCONS_00004748 mRNA upstream 443459 5667401 ~ 5684326 (-) True XLOC_002549
TCONS_00004749 mRNA upstream 564678 5788620 ~ 5821584 (-) False XLOC_002550
TCONS_00004738 other downstream 197630 5020277 ~ 5024285 (-) True XLOC_002543
TCONS_00004737 other downstream 199501 5020186 ~ 5022414 (-) False XLOC_002543
TCONS_00004736 other downstream 201415 5018558 ~ 5020500 (-) False XLOC_002543
TCONS_00004723 other downstream 1453149 3768651 ~ 3768766 (-) True XLOC_002530
TCONS_00004722 other downstream 1715261 3506540 ~ 3506654 (-) True XLOC_002529
TCONS_00004756 other upstream 726521 5950463 ~ 5950578 (-) True XLOC_002554
TCONS_00004759 other upstream 1193763 6417705 ~ 6431288 (-) True XLOC_002557
TCONS_00004760 other upstream 1248764 6472706 ~ 6472832 (-) True XLOC_002558
TCONS_00004765 other upstream 1387133 6611075 ~ 6638235 (-) False XLOC_002562
TCONS_00004766 other upstream 1398627 6622569 ~ 6623404 (-) False XLOC_002562

Expression Profile

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