RNA id: XM_036955566.1


Basic Information

Item Value
RNA id XM_036955566.1
length 5697
RNA type mRNA
GC content 0.69
exon number 6
gene id LOC118942019
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 41688135 ~ 41696129 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGTCTCAGCTACACGGGGACCACCAAGCGGGGACCACCGAACGGGGACCACCAAACGGGGACTACCAAGCGGGGACCACCGAGCGGGGACCACCAAACGGGGACCACCGAGCGGGGACTACCGAGCGGGGACAACCGAACGGGGACCACCGAACGGGGACTACCGAGCGGGGACTACCAAGCGGGGACCACCGAACGGGGACTACCGAGCGGGGACTACCAGAACGGGGACTACCAAGCGGGGACTACCAGAACGGGGACTACAGAGCGGGGACTACCAGAACGGGGACCACCGAGCGGGGACCACCGAGCGGGGACCACCGAGCGGGGACCAACGAGCGGGGACCACCGAACGGGGACCACCGAGCTCGGACTACCGAGCGGGGACCACCGAACGGGGACCACCGAGCGGGGACTACCGAGCGGGGACCACCGAACGGGGACTACCGAGCGGGGACCACCGAGCGGGGACCACCGAGCGGGGACTACCAGAACGGGGACTACCGAGCGGGGACTACCAGAACGGGGACCACCGAGCGGGGACCACCAAGCGGGGACCACCGAGCGCGGACTACCAGAACGGGGACTACCGAGCGCGGACTACCAGAACGGGGACCACCGAGCGGGGATTACCAGAACGGGGACCACCGAGCGGGGACCACCAAGCGGGGACCACCGAGCGCGGACTACCAGAACGGGGACTACCGAGCGCGGACTACCAGAACGGGGACCACCGAGCGGGGACCACCGAGCGGGGACCACCGAGCGGGGACCACCGAACGGGGACCACCAAGCGGGGACCACTGAACGGGGACCACCAAACGGGGACCACCAAGCAGGGACAACCGAAGGGGGACCACCAAACGGGGACCACCGAGCGGGGACTACCGAGCGGGGACTACCAGAACGGGGACTACCGAGCGGGGACTACCAGAACGGGGACCACCGAGCGGGGACCACCGAGCTGGGACCACCGACCAAACGGGGACCACCAAGCAGGGACCACCGAAGGGGGACTACCGAGCGGGGACTACCGAGCGGGGACCACCGAACGGGCACCACCGAGCGGGGACTACCGAGCGGGGACCACCGAACGGGGACTACCGAGCGGGGACCACCGAGCGGGGACTACCAGAACGGGGACTACCGAGCGGGGACTACTGAAATGGGGACCACCGAGCGGGGACTTCCGAGCAGGGACCACCGAACGGGGACTACCGAGCGGGGACCACCGAGCGGGGACCACCGAACGGGGACTACCGAGCGGGGACTACCAGAACGGGGACTACCAAGCGGGGACTACCAGAACGGGGACCACTGAACGGGGACCACCAAACGGGGACCACCAAGCAGGGACCACCGAAGGGGGACCACCAAACGGGGACCACCGAGCGGGGACTACCGAGCGGGGACTACCAGAACGGGGACCACCCAGCGGGGACCACCGAGCGGGGACCACCGAACGGGGACCACCGAGCGGGGACCACCGAGCGGGCACCACCGAGCGGGGACTACCAGAACGGGGACCACCGAGCGGGGACCACCGAGCTGGGACCACCGAGTGGGGACCACCGAACGGGGACCACCAAGCGGGGACCACTGAACGGGGACAGCCAAACGGGGACCACCAAGCAGGGACCACCGAAGGGGGACTACCGAGCGGGGACTACCGAGCGGGGACCACCGAACGGGCACCACCGAGCGGGGACTACCGAGCGGGGACCACCGAACGGGGACTACCGAGCGGGGACCACCGAGCGGGGACTACCGAGCGGGGACCACCGAGCGGGGACCACCGAACGGGGACTACCGAGCGGGGACTACCAGAACGGGGACTACCAAGCGGGGACTACCGAGCGGGGACCACCGAGCGGGGACCACCGAACGGGGACTACCGAGCGGGGACTACCAGAACGGGGACTACCAAGCGGGGACTACCAGAACGGGGACCACTGAACGGGGACCACCAAACGGGGACCACCAAGCAGGGACCACCGAAGGGGGACCACCAAACGGGGACCACCGAGCGGGGACTACCGAGCGGGGACTACCAGAACGGGGACCACCCAGCGGGGACCACCGAGCGGGGACCACCGAACGGGGACCACCGAGCGGGGACCACCGAGCGGGCACCACCGAGCGGGGACTACCAGAACGGGGACCACCGAGCGGGGACCACCGAGCTGGGACCACCGAGTGGGGACCACCGAACGGGGACCACCAAGCGGGGACCACTGAACGGGGACCACCAAACTGGGACCACCAAGCAGGGACCACCGAAGGGGGACTACCGAGCTGGGACTACCAGAACGGGGACTAACAAGTGGGGACTACCAGAACGGGGACTACCGAGCGGGGATTACCAGAACGGGGACCACCGAGCGGGGATCACCGAGCGGGGACCACCGAGCGGGGACTACCAGAACGGGGACTACCGAGCGCGGACTACCAGAACGGGGACCACCGAGCGGGGACCCCCGAGCGGGGACCACCGAGCGGGGACCACCGAGCGGGGACCACCGAGCGGGGACCACCGAACGGGGACTACCGAGCGGGGACTATCAGAACGGGGACTACCAAGCGGGGACTACCAGAACGGGGACTACCGAGCGGGGACTACCAGAACGGGGACCACCGAGCGGGGACCACCGAGCGGGGACCACCGAGCGGGGACTACCAGAACGGGGACCACCAAGCGGGGACCACCAAACAGGGACTACCAAGCGGGGACCACCGAGCGGGGACCACCGAGCGGGGACCACCGAGCGGGGACCACCGAGCGGGGACCACCAAACGGGGACTACCAAGCGGGGACCACCAAGGACCACCAAGCGGGGACCACCAAGCGGGGACCACCAAGCGGGGACAACCGAACGGGGACTACCAAGCGGGGACCACCAAGCGGGGGCCACCAAGCGGGGACCAACAAGCGTGGACCACCGAACGGGGACTACCAGAACGGGGACCACCAAGCGGGGACCACCAAGCGGGGACCACCGAACGGGGACTACCAAGCGGGGACCACCAAGCGGGGACCACCAAGCGGGGACAACCGAACGGGGACTACCAAGCGGGGACCACCAAGCGGGGGCCACCAAGCGGGGACCAACAAGCGTGGACCACCGAACGGGGACTACCAGAACGGGGACCACCAAGCGGGGACCACCAAGCGGGGACCACCGAACGGGGACTACCAAGCGGGGACCACCAAGCGGGGACCACCGAACGTGGACCACCAAGCGGGGACCACCAAGCGTGGACCACCAAGCGTGGACCACCGAACGGGGACTACCAGAACGGGGACCACCAAGCGGGGACCACCAAGCGGGGACCACCAAACGGGGACAACCGAGCGGGGACCACCAAGCGGGGACCACCGAGCGGGGACCACCGAGAGGGGACCACCGAGCGGGGACTACCGAGCGGGGACCACTGAACGGGGACCACCAAGCGGGGACCACCAAGCGGGGACCACCAAGCAGGGACCACCGAAGGGGGACCACCAAACGGGGACCACCGAGCGGGGACCACCAAGCGGGGACCACCGAGCGGGGACCACCAGAACGGGGACCACCAAGCAGGGACCACCAAGCAGGGACCACCGAAGGGGGACCACCAAACAGGGACCACCGAGCGGAGACCACCAAGCGGGGACCACCAAGCGGGGACCACCGAGCGGGGACCACCAGAACGGGGACCACCAAGCGGGGACCACCGTGCAGGGACCACCGAGCGGGGACCACCAAGCGGGGACCACTGAACGGGGACCACCAAACGGGAACCACCAAGCAGGGACCACCGAAGGGGGACCACCAAACGGGGACCACCGAGCGGGGACTACCGAGCGGGGACTAACAGAACGGGGACTACCGAGCGGGGACTACCAGAACAGGGACCACCGAGCGGGGACCACCGAGCGGGGACCACCGAACGGGGACCACCGAGCGGGGACCACCGAGGACCACCAAGCGGGGACCACTGAACGGGGACCACCAAACGGGGACCACCAAGCAGGGACCACCGAAGGGGGACCACCAAACGGGGACCACCGAGCGGGGACCACCAAGCGGGGACCACCAAACGGGGACTACCAAGCGGGGATCACCGAACGGGGACCACCAAGCGGGGACCACCGAGTGGGGACCACCGAGCGGGGACCACCAAACGGGGACTACCAAGCGGGGACCACCAAGTGGGGACCACCAAGCGGGGACCACCGAACGGGGACTACCAAGCGGGGACCACCAAGCGGGGACCACCAAGCGGTGACCACCAAGCGGGGACCACCGAACGGGGACCACCAAGCGGGGACCACCAAGCGGGGGCCACCAAGCGGGGACCACCAAGCGTGGACCACCGAACGGGGACTACCAGAACGGGGACCACCAAGCGGGGACCACCAAACGGGGACTACCAAGCAGGGACCACCGAGCGGGGACCACCGAGCGGGGACCACCAAACGGGGACTACCAAGCGGGGACCACCAAGTGGGGACCACCAAGCGGGGACCACCGAACGGGGACTACCAAGCGGGGACCACCAAGCGGGGACCACCAAGCGGGGACCACCAAGCGTGGACCACCGAACGGGGACCACCAAGCGGGGACCACCAAGCGGGGGCCACCAAGCGGGGACCACCAAGCGTGGACCACCGCACGGGGACTACCAGAACGGGGACTACCAAGCGGGGACCACCAAGCATGGACCACCGAACGGGGACTACCAGAACGGGGACCACCAAGCGGGGACCACCAAAACGGGGACAACCGAGCGGGGACCACCAAGCGGGGACCACCGAGCGGGGACCACCGAGAGGGGACCACCGAGAGGGGACCACCGAGCGGGGACTACCGAGCGGGGACCACCGAACGGGGACCACCAAGCGGGGACCACCAAGCGGGGACCACCAAGCAGGGACCACCAGAACGGGGACCACCAAGCGGGGACCACCGAGCAGGGACCACCGAGCGGGGACCACCAAGCGGGGACCACTGAACGGGGACCACCAAACGGGGACCACCAAGCAGGGACCACCGAAAGGGGACCACCAAACGGGGACCACCGAGCGGGGACTACCGAGCGGGGACCACCGAGCGGGGACCACCGAACGGGGACCACCGAGCGGGGACCACCGAGCGGGGACCACCGAGCGGGGACTACCAGAACGGGGACCACCGAGCGGGGACCACCGAGCTGGGACCACCGAGTGGGGACCACCGAACGGGGACCACCAAGCGGGGACCACTGAACGGGGACCACCAAACGGGGACCACCAAGCAGGGACCACCGAAGGGGGACCACCAAACGGGGACCACCGAGCGGGGACCACCAAGCGGGGACCACCAAACGGGGACTACCAAGCGGGGACCACCGAACGGGGACCACCAAGCGGGGACCACCGAGCGGGGACCACCGAGCGGGGACCACCAAGCGGGGACCACCGAGCGGGGACCATCAGAACGGGGACCACCAAGCGGGGACCACCAAACGGGGACAACCGAGCGGGGACCACCAAGCGGGGACCACCGAGCGGGGACCACCGAGAGGGGACCACCAAGCAGGGACCACCGAAGGGGGAACACCGAAGGGGGACCACCAAACGGGGACCACCAAGCAGGGACCAACGAATGGAGACCACCAAACAGGGACTACTTTTGGCTGAAATTACACAAACATTTTACAGTGGAAGTCCCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1939090 lncRNA upstream 26936 41660906 ~ 41661199 (+) True G1695347
TU1939082 lncRNA upstream 36204 41651641 ~ 41651931 (+) True G1695339
TU1938922 lncRNA upstream 201813 41485860 ~ 41486322 (+) True G1695199
TU1938898 lncRNA upstream 219475 41468422 ~ 41468660 (+) True G1695181
TU1938894 lncRNA upstream 229783 41458119 ~ 41458352 (+) True G1695177
TU1939123 lncRNA downstream 1220 41697349 ~ 41697768 (+) True G1695367
TU1939105 lncRNA downstream 9175 41705304 ~ 41724940 (+) False G1695357
TU1939106 lncRNA downstream 9175 41705304 ~ 41727472 (+) False G1695357
TU1939108 lncRNA downstream 9175 41705304 ~ 41727472 (+) False G1695357
TU1939111 lncRNA downstream 9175 41705304 ~ 41777461 (+) False G1695357
XM_036956354.1 mRNA upstream 1100553 40525993 ~ 40587582 (+) False LOC110499549
XM_036956356.1 mRNA upstream 1100553 40525993 ~ 40587582 (+) False LOC110499549
XM_036956353.1 mRNA upstream 1100553 40525994 ~ 40587582 (+) False LOC110499549
XM_036956355.1 mRNA upstream 1100553 40525994 ~ 40587582 (+) False LOC110499549
XM_036956357.1 mRNA upstream 1100553 40526002 ~ 40587582 (+) False LOC110499549
XM_036956358.1 mRNA downstream 133885 41830014 ~ 41862392 (+) False LOC110499555
XM_036956359.1 mRNA downstream 134809 41830938 ~ 41862392 (+) False LOC110499555
XM_036956361.1 mRNA downstream 477851 42173980 ~ 42282788 (+) False parga
XM_036956360.1 mRNA downstream 477869 42173998 ~ 42282788 (+) False parga
XM_021576625.2 mRNA downstream 712133 42408262 ~ 42413033 (+) True LOC110499494
TU1938999 other upstream 69630 41618027 ~ 41618505 (+) True G1695272
TU1937449 other upstream 1475182 40211522 ~ 40212953 (+) True G1693914
TU1937210 other upstream 1805510 39881958 ~ 39882625 (+) True G1693700
TU1937209 other upstream 1806292 39881349 ~ 39881843 (+) True G1693699
TU1936590 other upstream 2328500 39356345 ~ 39359635 (+) False G1693184
TU1939686 other downstream 813502 42509631 ~ 42511247 (+) True LOC110499605
TU1939722 other downstream 826381 42522510 ~ 42527008 (+) False LOC118942073
TU1939742 other downstream 826430 42522559 ~ 42526637 (+) False LOC118942073
TU1940344 other downstream 1083870 42779999 ~ 42780549 (+) True G1696324
TU1940630 other downstream 1437498 43133627 ~ 43134013 (+) True G1696541

Expression Profile