RNA id: XM_036956360.1


Basic Information

Item Value
RNA id XM_036956360.1
length 5085
RNA type mRNA
GC content 0.48
exon number 18
gene id parga
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 42173980 ~ 42282788 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGATTTTGTTTTGTTGCTGAGACGATGACGTGTCTGTTTTGTGGTACGTTACAGTCGAAACCGTATTTATGTAATATCTTTGGTTTAAGTGTTAACCTAACCTCACATcagctgtaaaaaaaacaacaacaactatgtTGTTGTACTAATTGTACCAAGTAAAAACGCTCGTGACAACAACGTAAAACTGTGAAGCTAATTGTGTCTAGCTATCCTTTACGAATTAGCTAGACCTTGGTCACTGCTGGCTGTACatgccaaaatgtattttgtgttgtTAAACTAGCTATAGATCCACTGTCGTATGTTTGCAAGCCGTATGATATTTTTCACTAGCCTGCTGAGGAGAGGACTCTGTGTGAAACCATTCTGGAACCATCGTTACCAAAACGCTTCGGTGGTATTACTGAATGAGGTTGTATTCATGACTGCACTGTCAGATTTGGAGCCTGCTAAAAAGAGACTGCGGGTTGAATTTGGCCTCCAAGCACCTGTCGGCTCAAGGAGCCCTCTTTCATTGGCTTTTAAAGCAAGTTCCAAAGAGGCAAGTCTACACGCAATGGAGGGGCAGCAGCATAGTGCCAAAGCAACATCTCTTAGTCAGAAAAACAATCCCAAGTCCCAACAGAATAACCCAGATAAGTGGTCATTGGAACTTCCCCAAAGCACCACAAGCCCAGCTTCTGACGTGTGTGAAGCTGCTGAACAACAACTGGAGGATGTAGAGATGGTGAGTCCAGACAGCTCCGAGTCTGGCTGCAGTCACAAGATCCAGTTTATGGAGACAGAGACCGAGGCCCAGACCCACAGTTCAGACTCTGAGGAACCTGTTGTCTCTAGTATTATAGACCTGGAGGATGAAGAGACAGTGCCCTTAACACCATCTGACAGCTTAAAGGATCACAAGCCGGTCTCGCAAGTCACCACAGATCACAAGCCGGTCTCGGAAGTGCCCACGGATCACAAGCCGGTCTCGGAAGTGCCCACGGATCACAAGCCGGTCTCGGAAGTGCCCACGGATCACAAGCCGGTCTCGGAAGTGCCCACGGATCACAAGCCGGTCTCGGAAGTGCCCACGGATCACAAGCCGGTCTCGGAAGTGCCCACGGATCACAAGCCGGTCTCGGAAGTGCCCACGGATCACAAGCCGGTCTCGGAAGTGCCCACGGATCACAAGCCGGTCTCGGAAGTGCCCACGGATCACAAGCCGGTCTCGGAAGTGCCCACGGATCACAAGCCGGTCTCGGAAGTGCCCACAGATCACAAGCCGGTCTCGGAAGTGCCCAAGGATCACAAGCCGGTCTCGGACCTGCCCACAGATCCTAAAGGGGACAGTGATGAGCAAATGGAGGAGACCGTGAGCCAGATCAACAGGCATCTGGACAAGCAGCAGGACACAGAAAGATCCTCCTCCAAGGGCCAAGGAAAAATAACAGACTTCTTCGCCCCATCCACAAGTGCCCAAGCTCCTTCGGAGAAACAACGCAGAGATGGAGAGGACGGCCCTCCACCGTCGCCACCGTACGATTCCAAGTGGCTGGGAAGCCCCATCAGTGATCTGAGGAGAATGCCACAGTGTGGTCGACCACTCCCACCACTGAAGAATACTCCTGACCATCACACTGTCATGatcaggACAGACCTCCTTCAAACAGGCAAAATTCCTGTTCCCTACCCCAACAAGTTCAGAGACGCCTGGGACGAGGTCCACGTGAAAATGCCCTGTTCAAAGAGCAACCTATTCCCCGTAGGAAATCAGGAAGTGCAGGAACGGTGGGAACTCATCCAGAAAGCTTTAAACAGAGAATTTTCCAGTTCCCATGATGTGAAGAATGCCATATTGAAGTACAATGTTGCTCATGCCAAGAGATGGGACTTCACAGTTCTTCATTTGTTCTGCAACAAGGATCTGGAGCCTGACGTCGTTCATCATCTGTTTAGGTCTCTGCTGCCTGAAATGGTCCAATTAGCACTGAGTGTGTCTGAGCTGTGCAACAAGCCCATCCCTCTGCTGAAGGAAGGAATGAACCACTCCATCACCCTGTCTCAGATGCAGGTGGCTTCTCTATTGGCCAATGCCTTCTTCTGTACCTTCCCCCGACGCAACAACAGGAAGTCAGAATACTTCAACTACCCTGACATCAACTTCTACAGGCTGTTTGAGGGCTCTTCCCCAAAGAAGAGGGAGAAACTGAAAACACTTTTGTGCTATTTTCGAAGTGTAATCGAGCAAAAACCTACTGGACTTGTGACGTACACAAGAAAGTGTTTGGATCGGCCTCCAAATTGGAAAAACTCCCAGAATCAGCTCACCAAGCTTCACATCACATGTGTAGGAACCATAGAAGACGACGGGCACGGCATGCTGCAGgTGGACTTTGCCAACCGGTTTGTGGGCGGAGGGGTCACCGGATCGGGTCTGGTTCAGGAAGAGATTCGCTTCCTGATTAACCCTGAACTCATCGTCTCTCGCCTCTTCACTGAAGCCCTGCTGCAGAATGAGTGTCTCATCGTCACAGGTACTGAGCAGTACAGTACGTACACTGGCTACGCAGACAGCTACCTATGGGACGGCAAACATCAGGACAAGACCCCAAGAGACACCTGGCAGAGGAGGTGCACAGAGATCGTAGCAATGGACGCTCTGAAGTTCAGGAACTTCCTCGAACAGTTTCACCCTGAGAAAATGAACAGAGAACTGAATAAGGCATACTGTGGCTTTTCCCGCCCAGGGGAGAGGAGTCAGGATCTCTCTGCGGTTGCTACAGGAAACTGGGGCTGTGGTGTGTTCGGTGGAGACGCTAGGTTTAAAGCTCTGCTCCAGATTCTGGCAGCCTCTGAGGCAGGCCGAGACGTGGCCTATTTCACCTTTGGTGACAGCGCCCTGATGAAAGACGTCTACGACATGCACTACTTCCTCACACAGAGACACGTCAGCGTCGGGGCTCTGTACAGTTTGCTGGGTCAGTACTACAGCTCAGTGTGTCAGAGCTGCTTCACCCGCCGTCCTGACATCAGCCTCTACTCCTTCATCTACCAGGAGGCCAGCTCTGTCTCCCCCTAGACCAGAAACACACACGCAGGTCGGCTCCCCCTAGAAGATCGGAGACGCCACGTCACACAGGTCGGCTCCGCCTAGAAGACCGTAGATgccacatccccccccccccggacaCAAAACAAGCGCTGTGCCCCGCGAGAGATTCCAGTGGAAGTTTGTCTTGTCATTCTGCCACTGGTAGCTGATACGCACATGGATAGAGATTCAATGTGTTGAGATTTGTGATTTGGAATAGTAAAGCCAAAGGCTGTCATCCATCTTGTGAGTGTGTCATGTTTCCTTggttttacccccccccccccccccataaatccAGACTAAATGAATCAGTTGTCAGAAATCCAGTTGATGGAAAGAATGAATAGAGCCGTTCTTAGAGAGgatttaaacaaataaaataaactttTAATTTGATCATTGGGAAATGATCTTTAGTCTTTGGCTGGTTACTCTGTTCTGCACTGGAGAGAAGCTGACTCTGTGTGGGGATGATCACTTAAAGTGTGTGCCGtgatcatttattttattttcaaatatttcAGATTATCATGGCCCTAGCCATGGTCCTCTAAGTGGATATATTATCATGGCCCTAGCCATGGTCCTCTAAGTGGATATATTACCATGGGCCTAGCCATGGTCCTCTAAGTGGATATATTACCATGGCCCTAGCCATGGTCCTCTAAGTGGATATATTACCATGGGCCTAGCCATGGTCCTCTAAGTGGATATATTACCATGGCCCTAGCCATGGTCCTCTAAGTGGATATATTATCATGGCCCTAGCCATGGTCCTCTAAGTGGATATATTACCATGGGCCTAGCCATGGTCCTCTAAGTGGATATATTACCATGGCCCTAGCCATGGCCCTCTAAGTGGATATATTACCATGGCCCTAGCCATGGTCCTCTAAGTGGATATATTACCATGGCCCTAGCCATGGTCCTCTAAGTGGATATATTACCATGGCCCTAGCCATGGTCCTCTAAGTGGATATATTACCATGGGCCTAGCCATGGTCCTCTAAGTGGATATATTACCATGGGCCTAGCCATGGTCCTCTAAGTGGATATATTACCATGGCTCTAGCCATGGGCCTCCATTCAGTGGATATAATACCATGGCCTCCATTCAGTGGATATAATACCATGGCCTCCATTCAGTGGATATAATACCATGGCCTCCATTCAGTGGATATATTACCATGGCCTCCATTCAGTGGATATATTACCATGGCCTCCATTCAGTGGACATATTACCATGGCCTCCATTCAGTGGATATATTACCATGGCCTCCATTCAGTGGATATATTACCATGGCCTCCATTCAGTGGATATATTACCATGGCCTCCATTCAGTGGACATATTACCATGGCCTCCATTCAGTGGATATATTACCATGGCCTCCATTCAGTGGATATATTACCATGGCCTCCATTCAGTGGATATATTACCATGGCCTCCATTCAGTGGATATATTACCATGGCCTCCATTCAGTGGATATATTACCATGGCCTCCATTCAGTGGATATATTACCATGGCCTCCATTCAGTGGATATATTACCATGGCCTCCATTCAGTGGATATATTACCATGGCCTCCATTCAGTGGATATATTACCATGGCCTCCATTCAGTGGATATATTACCATGGCCTCCATTCAGTGGATATATTACCATGGCCTCCATTCAGTGGATATATTACCATGGCCTCCATTCAGTGGATATATTACCATGGCCCTAGCCGTGGGCTTAAGTGGAtatattatttgttatttttgtgcCACATACAGGAAATAATGTGAACAAGTGTACTTAATGACACCCTGTCCGATAATATAATTAGATTTTCAACTCTAAGTAGTAGTCTGACTGTAGGAAAAGTGATTTATTAAGATAATGCTGTATGCCTCAACATCTTAAAACATTGAAAAGTGAGAAATTGGTTTTGAATTGTTTTGTGTGATAATGGATTTTTTGTGGAGGGATAATTAATTAAAAATATGTAACTCGTTTTATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1939475 lncRNA upstream 47683 42126113 ~ 42126315 (+) True G1695676
TU1939474 lncRNA upstream 48076 42125617 ~ 42125922 (+) True G1695675
TU1939473 lncRNA upstream 49089 42124588 ~ 42124909 (+) True G1695674
TU1939468 lncRNA upstream 51278 42122226 ~ 42122720 (+) True G1695672
TU1939465 lncRNA upstream 55159 42112527 ~ 42118839 (+) True G1695669
TU1939513 lncRNA downstream 654 42283442 ~ 42283748 (+) True G1695711
TU1939566 lncRNA downstream 8686 42291474 ~ 42291685 (+) True G1695748
TU1939567 lncRNA downstream 11595 42294383 ~ 42294652 (+) True G1695749
TU1939579 lncRNA downstream 19138 42301926 ~ 42302158 (+) True G1695754
TU1939584 lncRNA downstream 27082 42309870 ~ 42310087 (+) True G1695758
XM_036956358.1 mRNA upstream 311606 41830014 ~ 41862392 (+) False LOC110499555
XM_036956359.1 mRNA upstream 311606 41830938 ~ 41862392 (+) False LOC110499555
XM_036955566.1 mRNA upstream 477869 41688135 ~ 41696129 (+) True LOC118942019
XM_036956355.1 mRNA upstream 1586416 40525994 ~ 40587582 (+) False LOC110499549
XM_021576625.2 mRNA downstream 125474 42408262 ~ 42413033 (+) True LOC110499494
XM_021576726.2 mRNA downstream 133307 42416095 ~ 42419081 (+) True LOC110499602
XM_036956365.1 mRNA downstream 201756 42484544 ~ 42510757 (+) False LOC110499605
XM_036956366.1 mRNA downstream 239749 42522537 ~ 42526646 (+) False LOC118942073
XR_005038025.1 mRNA downstream 311216 42594004 ~ 42598619 (+) False LOC118942074
TU1938999 other upstream 555493 41618027 ~ 41618505 (+) True G1695272
TU1937449 other upstream 1961045 40211522 ~ 40212953 (+) True G1693914
TU1937210 other upstream 2291373 39881958 ~ 39882625 (+) True G1693700
TU1937209 other upstream 2292155 39881349 ~ 39881843 (+) True G1693699
TU1936590 other upstream 2814363 39356345 ~ 39359635 (+) False G1693184
TU1939686 other downstream 226843 42509631 ~ 42511247 (+) True LOC110499605
TU1939722 other downstream 239722 42522510 ~ 42527008 (+) False LOC118942073
TU1939742 other downstream 239771 42522559 ~ 42526637 (+) False LOC118942073
TU1940344 other downstream 497211 42779999 ~ 42780549 (+) True G1696324
TU1940630 other downstream 850839 43133627 ~ 43134013 (+) True G1696541

Expression Profile