RNA id: XM_021576625.2


Basic Information

Item Value
RNA id XM_021576625.2
length 3068
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC110499494
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 42408262 ~ 42413033 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCGTGTCAATGAAGATAAATCCTTTCCACTAATCCATGTCTATCCTTTTAATCTGGGGTTTCAGAACGACGTTCAGACCTGTATGAGGCACTGAGATAGCAACACGATGCTTCGCTGGCTTGGCAGAACGAAATAAACAttacttcttttttttctttcaaaagaGATCTTGTAGTTTAGTTTGATAGTAGGCCTATATTTTGGTAGTATAGTTTCGGAGAGAAAATGTTTCGAGGTTTTAGCCTGAGTTTCTGCTTGACATTATTTTGCTTCGGACCGTTTGTTTGCAGCGCGTGTCCGTCTCAATGTAACTGCTTCTTTCACAAATTATCAGACGGATCCAAagcaagGAGTGTCCTTTGCAATGACCCACAGATTACTCTGATCCCACCCAACTTTCCTGCAGACACCTCGAAACTGAGGATCGAGAAGACTGCCATCACAAAGATCTCCAGCGAAACCTTTCACTACCTCAACAGTTTGGAATTTCTCTGGATGTCTTTCAATTCTCTGAACTCTTTGAATGTAGACAGCTTCCGTGGCCTGAGAAGTCTGGACGAGCTGAGACTGGAAGGGAACGCACTCACCTCTTTCCCCTGGGAATCTCTGACTGATATGCCCAACCTGAGGCTACTGGACCTACATAATAATAAGATATCGTCGATCCCGGCCGAGGCGACCATTTACATCAAGAACCTGACCTACCTGGACTTATCTAGCAACAACCTGGCCACCGTACCTCCTGAGGTTCTCTCTATGTGGTTATCTGTGAAACCGTCTCAAGAAGACGGGGACAGTTCCAAATATATTCTAGGTCTCCATGACAACCCATGGCTATGTGACTGCCGGCTCTATGACCTGGTCCAGTTCCAGAAGTCTCCGTCATCCTCTGTGGTTCTGATCGACACCAAGCTGCGCTGTGCTGACCCGGAGAGCCTGTCGGGGGTGCTGTTCAGCGAGACGGAGCTCCAGAGGTGTCAGGGGCCCCATGTCCACACAGCTGTGGCCCGGGTCAGGAGCTCCCTGGGGAACAACGTCCTGCTACGTTGTGGGACTATCGGAGTCCCAGTACCAGAGCTGTCCTGGACCCGGGCAGACGGCAAACAGATGAACGGCACTGTTCAGGAAGAAGTTTCAAAGGAGGGAATCATTTGGTCCATCCTGAGTGTGCCTGCCGTCTCTTACCGGGACTCTGGGAAATACATGTGCAAAGCGACCAACTTCGTGGGGACTGCAGATGCCATCATCTCCCTGGTTATTACAGACTCCTTTAAAAATGAGGAACAAGGTGGCAGCTCCAAGACTAGAAACCAAAGAGGACGGAAAACCGGTGGATTTGGGAAAGCTGCCTACCAGAAGAAACTTGTTGCCAGATACATACCTCCACCAACCACGACGGCAGCTATGCCCATCATCGAGCCACTAGGACCGAGTGGTTTCACAGGGAGGTATGATATCGAGAGCTACAGTATTTTGGATAGTGTGGCCGATGGACAGACGCCCGGTCCTCCTGCCACGGAGCCGGCGATTATTAAGGAAGTGGAGAAGGAGGTTCTTAGCAACCTGGCAGCCAACGCCTCTTCTTTGCAGGCATCGGCGCCGCCGGAGAGACGGGTGGTACGATCGGTGAAGGTCATCGGGGACACCGATCACACCGTCTCCCTGAACTGGCGGGCCCCGACGGCCAAGAACACCACCGAGTTCAGCGTCCTGTATGCCGTTTTCGGCGAGAGGGACATGCGGAGGATCAACGTAGGCGTGGGAAAGAACCGTATCACCATCGACGGCCTTGTGCCAAGGACAAAGTACATCGCCTGCGTCTGCGTCAAAGGCCTGATCCCTAAAAAGGAGCAGTGTGTAATCTTCTCAACGGACGAGGCGGCCAGCGCAAGCGGCACCCAGAAGCTCATTAACGTGGTGGTGATCACCGTGGCCTGCGTGATCGCTGTCCCCCTGACACTGATCGTCTGCTGCGGGGCGCTCAAGAAGCGCTGTAAAAAGCTACTGGGGAGGAAATCCAAAGATATTCAAGACTCATATGTAACATTCGAGACCCTCTCCCCGGGACAGAAGCCTAAGGGGATGGAGGGGGAGTACCTTGCCAGGCAACACCCAGACGAGTCCAACAGACTGCTCTCTGCTAGATCCAGTGTGGACTCTGGGGCTACTTGTAGGAATGAGGGACCCCCTAGTGAGTACTTTTGTTGATACCAAATGAAGGCCTCAACCTTTACAGGGCAGAGAAGTCTGTCCTTTCCAAGCAGAACTTAAGTTGGTTGGCTGGTCTCTTCTGGCAAGTGATGTATTGTAGATGAGTGAAACTGCTCAGAGACGGGGCAGAAACCAAAGGACAGTTGCATGGACAAGTGTGGTATATATGTGAGTCTAGATAAATAGGATAAATAAATGCTGACATAACTGTGATTATACAGCCTTGCAGAAATACAGGCCAACCTTGACCCGGTGaactgtaaaaaataaattaaaaaaaaaacagaaacaatttttttatttaaaatgtggAAGTAAGCATTTTGTATTTGTCATGCACTTTTAAGGGGGTAACGTAGTGTAAGCAGTTGTCTTTCTTTGAAATGACACTAGGGTTACACAGTTATGCTAACTTTtacaaaattcccaggttttccagaagtTCTTGGTGGAATAAGGAAACCCAAAATGGCACGTTCCTACCAGAATGCATGAAACCCATCTTTTTAACATACGGAGGAAGAGTAATGACAGTTATTCTGAAATGAATCTGACCTCAGAATTCTGGTAGTATTTATTTGACGAAATAATggacatgtaaagtattggtgaAGCAACTCATATCTGTAGCGATATTTTGTACCTCTGTGTATTTACCATAAACGTTAATGTGCCAGGTTTACTGTCCAATCAAACCTAACATACTATACATTTTGTAATATATATATCTATGATCTGATCTGATatatcagtaccagtcaaaagtttggacacacctactcattaaagggtttttctttattttaaaacttttctacattgtagaataatggtgaagacatcaacactatgaaata

Function

GO: NA

KEGG:

id description
K24491 LRIT; leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1939638 lncRNA upstream 13855 42392478 ~ 42394407 (+) True G1695798
TU1939632 lncRNA upstream 19679 42388358 ~ 42388583 (+) True G1695795
TU1939615 lncRNA upstream 54201 42353280 ~ 42354061 (+) True G1695781
TU1939612 lncRNA upstream 57854 42350081 ~ 42350408 (+) True G1695780
TU1939611 lncRNA upstream 59852 42348195 ~ 42348410 (+) True G1695779
TU1939655 lncRNA downstream 25707 42438740 ~ 42440591 (+) False G1695815
TU1939657 lncRNA downstream 26406 42439439 ~ 42440591 (+) True G1695815
TU1939659 lncRNA downstream 31057 42444090 ~ 42445201 (+) True G1695816
TU1939660 lncRNA downstream 32948 42445981 ~ 42446210 (+) True G1695817
TU1939661 lncRNA downstream 35418 42448451 ~ 42448849 (+) True G1695818
XM_036956361.1 mRNA upstream 125474 42173980 ~ 42282788 (+) False parga
XM_036956360.1 mRNA upstream 125474 42173998 ~ 42282788 (+) False parga
XM_036956358.1 mRNA upstream 545870 41830014 ~ 41862392 (+) False LOC110499555
XM_036956359.1 mRNA upstream 545870 41830938 ~ 41862392 (+) False LOC110499555
XM_036955566.1 mRNA upstream 712133 41688135 ~ 41696129 (+) True LOC118942019
XM_021576726.2 mRNA downstream 3062 42416095 ~ 42419081 (+) True LOC110499602
XM_036956365.1 mRNA downstream 71511 42484544 ~ 42510757 (+) False LOC110499605
XM_036956366.1 mRNA downstream 109504 42522537 ~ 42526646 (+) False LOC118942073
XR_005038025.1 mRNA downstream 180971 42594004 ~ 42598619 (+) False LOC118942074
XM_036955568.1 mRNA downstream 242724 42655757 ~ 42660010 (+) True LOC110499499
TU1938999 other upstream 789757 41618027 ~ 41618505 (+) True G1695272
TU1937449 other upstream 2195309 40211522 ~ 40212953 (+) True G1693914
TU1937210 other upstream 2525637 39881958 ~ 39882625 (+) True G1693700
TU1937209 other upstream 2526419 39881349 ~ 39881843 (+) True G1693699
TU1936590 other upstream 3048627 39356345 ~ 39359635 (+) False G1693184
TU1939686 other downstream 96598 42509631 ~ 42511247 (+) True LOC110499605
TU1939722 other downstream 109477 42522510 ~ 42527008 (+) False LOC118942073
TU1939742 other downstream 109526 42522559 ~ 42526637 (+) False LOC118942073
TU1940344 other downstream 366966 42779999 ~ 42780549 (+) True G1696324
TU1940630 other downstream 720594 43133627 ~ 43134013 (+) True G1696541

Expression Profile