RNA id: TU1939722


Basic Information

Item Value
RNA id TU1939722
length 4014
RNA type TUCP
GC content 0.41
exon number 4
gene id LOC118942073
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 42522510 ~ 42527008 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cccccctacacaccaGGGAAACAAAGTGATCACACAAAGCCAATACTTACAATGTTTCAAAGTGTCTTTATTTGTTATTGTCATTCAGTATCACGTTTCCAACAGTCTCACAGCATCAGATGCAGAATGCAGAGAAAAGGGGAAAAATAAATCTCAAACTTAAACCATTTTCCTTTTCCACATACTAAAATAaaaaacaccaaataatacaGTCTCCTTCAAAGAAAATAGAAAAAGTAGCAAAACTAAGGAGCAGTCTGGAACTATAAGGACAACAGAACAGAAAGATGGATCTGCATAAATACATATATACAAAAACCAACAGCATCATATCTCCCCGTGAAAGCAGAGTGCAGTGTGTAGCAGTTGACGCAGGAAACAGACCTTTTactgggggggaaaaaaaaaaaagaatcatcTCGTTGATCCGGGAGGAAAATACTAAACACCTAAATAGTTCAGTTTGTTTGGATTACTGCTCATAATGCGAACATATCCATATTGTAGCCACCAGTAGATGATTAAATATCACAATTACTAACATCACCATTCATGTGTTAATTAACAAGAGGATTATTTAAATGGATCATCTACATGCGCAACCAAAATCCTGCAAGCAAATGGGAGGcgttttgaccagagtcctatgaggcctggtcaaaagtagtgcactacatagggaatagggtgccaaccctggtcaaaagtagtgcactacatagggaatagggtgccgtttgataCACATCCGATGACTCTCCAACTCAATGTTTCAGACGAAAATCACTGGTGTCCGAACCAGGAAATGAGGTCACTCAAAGCCAACCCGACAACAAATCACTGGTGTCCAAACCAGGAAATGAGGTCACTCAAAGCCAACCCGACAACAAATAACTGGTGTCCAAACCAACCTATCAGGTCACTCAAAGCCAACCCGACACCAAATCACTGGTGTCCAAACCCACCTATCAGGTCACTCAAAGCCAACCCGACAACAAATCACTGGTGTCCAAACCCACCTATCAGGTCACTCAAAGCCAACCCGACAACAATCACTGGTGTCCAAACCAACCTATCAGGTCACTCAAAGCCAACCCGACAACAAATCACTGGTGTCCAAACCAACCTATCAGGTCACTCAAAGCCAACCCGACACACCATTTTGTTATTACATTTTGCCAGGGATGCCCACCTCCCCTTTAAAAACGGTAGTTTGGTAAATGCTTGTGTTAATCTCCCTGCTTTTAATACCGCAGAGGGAGAAGAACGATGAGGTATTCGTGATAGGAAAACAAGCGGTGAAAGAAGAAACATTAAAATATACACCATCCCATTTGCACATTGATAACATTTACCTAATCTAGTATACACCgtgtatacactgagtggacaaaacattaggaacacctacttACTCTATCCGTTGACGtaggctgaccaggtgaatccaggtgaagggtATGAAGTCGATTATTAAATCtacttccgagtggcgcagcggtctaatgcactgcatctcagtgctagaggcatcactacagacctgggtttgatcTCGGGCTGTATCATAACCGCCCGTGATCGGGAGgcacacaattggcacagcgtcgtccgggttaggggagggtttgtcccggcgtaggccgtcattgtaaaataagaatttgttcttaactgacttgcctagttaaataaaaatcagtatagatgaagggcaGGTTAAAGAATTATTTTTAAGCCCTGATACAATTTatacagattgtgtgtgtgtgcagattcagacagatggtgaatgggcaagacaacagagTTAAGaccagcctccctgtggaacactttcaacaccttgtagagtccataccccgaTGAATTGtggctgttttgagggcaaaggATTGGgggtgggtgcaactcaatattaggatggtgttcttaatgttttgtacactcagtgtctaTTGGTTACAAAACTAACAATGCGGCCTACAGTTGAGTCTCAATACGATGCCTTAACATtatttataccatggcattgttggaTACtctgtttctgattggcttgaagggcattccagagcgtgcattatttccctataacaCACAGTATTTCagcacggtagaattcaatggctatagttcattcttacatgttaTATGTTTAAGCTGCTTTTAAAAACAAAAGTATATTTGAAAAACTGCATTTTTGAATTAGATTTTCATTATAGCAAGCTTGGACCGATGGTTTGCTTAATAactaaactagcaagtctgtttgtttggttccCGTGGCAACTTTCTAGCTACtttgcaaatgaacacatttctagcggCAAACGTGTTTAATTTATAGCTGTGGTATAAAAGGAATAATCAACTCAGGCTCTCTGGGAAATAGTGCAATTCAGTGGAAGGTTAGTTTCGCTCCGCTAGCGCGTCGTGGAACACACCTTCGACGTCGTGCATTATCTTCCACGTCGTGCATTATTGTCCATAGAACGCATcttgttgattatcccttacatgtTGTCTCAAAAACACACTGACATTTACAATCTATGTCGAGAATTTTTTTTCAATCTCGATGTCATTAGGCTCAGGATATTCCTCCAAACTTCACTTCAAAATGTAATACAATAGATTTTCATAGATGCGCTCCATGACTTGAAGAGAGATTCTTCAACTTGAGTGATGCGCTCTAGGCCACTTTATTCAAGGTGCAACTGAAACGTGACTATTCCAAAACCCtccgaaagacacacacacaggttggagCAGCCTTACCACCGAGCCCGTGGAACAGTTGCTGTacggggttaagtgccttgctcaagatcACAACGGcaggcaatggcatctaggatGTGATACCAACAACCATCTCGTTGCCTGTTCACTTCCCAAACGATTTTTCCCATCCGACCTCGGGTTTCAAACTGGCAACCCTCTGGATGCTGGCTAACCTCTAACTGCCAGGCTACCTGTTACTTTGGATTGGGTGACTGTTATGTATACCGATACAGACTGTTCAACGTAAAAACATGTCATCAAAGTCAATAAATGACAAAAACACTTTCTTGGCATGTATCTCTACTTGACATTTCGTTGTTTTTTTCTTCCAGAAAGTCTGACAAGAAACAGAATAATAATTTCCGACAATAtaagtaaatataaataaaacaccCATGTTACAATAACATTATATTGTATGTTTCATGTGATTGGAAGTTTAACTGATCTAATCACAACTTGCTCAAGAGGATGGAAATGGAACAAAATAAATGGCTGTTTATTTGTGAAAATAAAACGTGCATCCAGCCATCATGTGACGATGTAGGAACGCTTGACGTATCACACACTAGTCATCATGTGATGACGTAGGGAACGCTTGACGTATCACACACACTAGTCATCCATCACTGACAGCGACGTGGATAGTTCATAGTAATAACAATATCAGCTGGTTTCTGGGTATGTCCTGGTTGGCACTTCAcaccctacttttttcaattgtAACTGAAATCAagtattttttgtatttaatGTAACACCTCAGATAATGTCACATTTAACCACGAGAGAGCCATTATAGATATTACATGAGTAtttgtgtatttaaaaaaaaaaaaagacaccagaacgaaaataaatatttaaaaaaaaaataacaaagaaaaaaATGAACTAAATATAAACAAGCAAacatttctccccctccctcctccattgAACTGGGATGTTCTTTACAAACAAGAATATCTTGTCTTTCTTCGGGTTATTGAGAGGATCGGAGTTCAATAACACAGTTGGCTTCACGAGGCTCGTGGTTTCTTAAGAAAAAAAAGTGGcttcaaggagagagagaatacttcCATTGAAATACACAGAGAGCGTTTGTCAGATGTCTTGAGCAGATCTTCAGAGACAGACGGAGAAGAAagcgagggggggagaggagcGGAGGGATGGGCTCACACGTCCACCACCATCTTTTTGTGTATGTCAAGGCCACCCACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1939703 lncRNA upstream 323 42521951 ~ 42522187 (+) True G1695854
TU1939698 lncRNA upstream 9542 42512618 ~ 42512968 (+) True G1695849
TU1939691 lncRNA upstream 23889 42498407 ~ 42498621 (+) False LOC110499605
TU1939682 lncRNA upstream 45256 42477020 ~ 42477254 (+) True G1695836
TU1939681 lncRNA upstream 45667 42476644 ~ 42476843 (+) True G1695835
TU1939754 lncRNA downstream 4911 42531919 ~ 42532423 (+) True G1695860
TU1939755 lncRNA downstream 6131 42533139 ~ 42533449 (+) True G1695861
TU1939752 lncRNA downstream 11429 42538437 ~ 42539001 (+) True G1695859
TU1939758 lncRNA downstream 12726 42539734 ~ 42540170 (+) True G1695864
TU1939766 lncRNA downstream 30396 42557404 ~ 42558519 (+) True G1695870
XM_036956365.1 mRNA upstream 11753 42484544 ~ 42510757 (+) False LOC110499605
XM_021576726.2 mRNA upstream 103429 42416095 ~ 42419081 (+) True LOC110499602
XM_021576625.2 mRNA upstream 109477 42408262 ~ 42413033 (+) True LOC110499494
XM_036956361.1 mRNA upstream 239722 42173980 ~ 42282788 (+) False parga
XM_036956360.1 mRNA upstream 239722 42173998 ~ 42282788 (+) False parga
XR_005038025.1 mRNA downstream 66996 42594004 ~ 42598619 (+) False LOC118942074
XM_036955568.1 mRNA downstream 128749 42655757 ~ 42660010 (+) True LOC110499499
XM_021576633.2 mRNA downstream 218156 42745164 ~ 42774109 (+) False LOC110499501
XR_005038026.1 mRNA downstream 276581 42803589 ~ 42827092 (+) False LOC118942075
XM_036956384.1 mRNA downstream 294789 42821797 ~ 42827092 (+) False LOC118942075
TU1939686 other upstream 11263 42509631 ~ 42511247 (+) True LOC110499605
TU1938999 other upstream 904005 41618027 ~ 41618505 (+) True G1695272
TU1937449 other upstream 2309557 40211522 ~ 40212953 (+) True G1693914
TU1937210 other upstream 2639885 39881958 ~ 39882625 (+) True G1693700
TU1937209 other upstream 2640667 39881349 ~ 39881843 (+) True G1693699
TU1940344 other downstream 252991 42779999 ~ 42780549 (+) True G1696324
TU1940630 other downstream 606619 43133627 ~ 43134013 (+) True G1696541
TU1940489 other downstream 610385 43137393 ~ 43138115 (+) True LOC110499564
TU1940662 other downstream 680551 43207559 ~ 43209518 (+) True G1696563
TU1941117 other downstream 1096476 43623484 ~ 43626360 (+) True G1696904

Expression Profile