RNA id: TCONS_00004744



Basic Information


Item Value
RNA id TCONS_00004744
length 367
lncRNA type lincRNA
GC content 0.42
exon number 4
gene id XLOC_002547
representative True

Chromosome Information


Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 5525393 ~ 5527364 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


AATTCTCCCTGCTCGCCTCGGCCACAGCATTCAGTCTTGGCAGCACAAACAGCAGATCAATCAATATCACCTTGAGAAATGTCTTCAACAGAAACAGCAACAGATATCACAAACAACCACCTCAACATCATCTcgtatttatcgagtatggccatacacctaaagcacttcacaatcatgaggggggtctctccacacacgaccagtgtgcagcatttacTTGCATGATGCAACGGCACCCACAGGACAAAGAGGCAAGTGCGCTCACCACACGCCAGCTATAGGTAGGTACACTCTTCCAagaaacacataatattttattcttaacaatatttcatttaattatagtcattttaactatttagta

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000142214

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00005988 lncRNA downstream 301451 5221915 ~ 5223942 (-) True XLOC_002546
TCONS_00005987 lncRNA downstream 302974 5221915 ~ 5222419 (-) False XLOC_002546
TCONS_00004741 lncRNA downstream 466570 5052862 ~ 5058823 (-) True XLOC_002544
TCONS_00005986 lncRNA downstream 501108 5018558 ~ 5024285 (-) False XLOC_002543
TCONS_00004732 lncRNA downstream 515118 5003992 ~ 5010275 (-) False XLOC_002543
TCONS_00005989 lncRNA upstream 261256 5788620 ~ 5790151 (-) False XLOC_002550
TCONS_00005990 lncRNA upstream 327270 5854634 ~ 5855125 (-) True XLOC_002552
TCONS_00005991 lncRNA upstream 509517 6036881 ~ 6037746 (-) True XLOC_002555
TCONS_00005992 lncRNA upstream 861905 6389269 ~ 6409797 (-) True XLOC_002556
TCONS_00004764 lncRNA upstream 1045574 6572938 ~ 6577465 (-) True XLOC_002560
TCONS_00004742 mRNA downstream 389605 5092511 ~ 5135788 (-) False XLOC_002545
TCONS_00004743 mRNA downstream 389605 5094123 ~ 5135788 (-) True XLOC_002545
TCONS_00004739 mRNA downstream 466570 5041977 ~ 5058823 (-) False XLOC_002544
TCONS_00004740 mRNA downstream 471804 5042269 ~ 5053589 (-) False XLOC_002544
TCONS_00004735 mRNA downstream 500873 5017218 ~ 5024520 (-) False XLOC_002543
TCONS_00004745 mRNA upstream 6479 5533843 ~ 5568379 (-) False XLOC_002548
TCONS_00004746 mRNA upstream 8768 5536132 ~ 5581487 (-) False XLOC_002548
TCONS_00004747 mRNA upstream 9402 5536766 ~ 5568379 (-) True XLOC_002548
TCONS_00004748 mRNA upstream 140037 5667401 ~ 5684326 (-) True XLOC_002549
TCONS_00004749 mRNA upstream 261256 5788620 ~ 5821584 (-) False XLOC_002550
TCONS_00004738 other downstream 501108 5020277 ~ 5024285 (-) True XLOC_002543
TCONS_00004737 other downstream 502979 5020186 ~ 5022414 (-) False XLOC_002543
TCONS_00004736 other downstream 504893 5018558 ~ 5020500 (-) False XLOC_002543
TCONS_00004723 other downstream 1756627 3768651 ~ 3768766 (-) True XLOC_002530
TCONS_00004722 other downstream 2018739 3506540 ~ 3506654 (-) True XLOC_002529
TCONS_00004756 other upstream 423099 5950463 ~ 5950578 (-) True XLOC_002554
TCONS_00004759 other upstream 890341 6417705 ~ 6431288 (-) True XLOC_002557
TCONS_00004760 other upstream 945342 6472706 ~ 6472832 (-) True XLOC_002558
TCONS_00004765 other upstream 1083711 6611075 ~ 6638235 (-) False XLOC_002562
TCONS_00004766 other upstream 1095205 6622569 ~ 6623404 (-) False XLOC_002562

Expression Profile


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