RNA id: XM_036956384.1


Basic Information

Item Value
RNA id XM_036956384.1
length 1742
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC118942075
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 42803589 ~ 42827234 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttattctacaatgtagaaaatagtaaaaaaaataaagtaaaacacttgaatgagtcggtgtttcaaaaacttttcactggtactggaTATCTAAACGGGTCTtacattttaaatcaaatcaCTAAATGATCCATCTGAAAaaaattccatatgttagcttagtagacccccccccccaacggcTTTTAGACTTTTAGAAGTAGCGACatcaactgttttttttttttacatcaccaATCAATGCGGATAGAGCaggcaagagagagtgagagagggttgaggaggtgACTTTATAGGAATTAGGTCCACAGAATTATACCCAGGAGTAgcggcttctatggaggaactttgaatgtcctttaagctagcttgctaacaagcttttgtacagtagcctatgcttctGAGGGAGAGGGGCATGTAGCCTAAACATGAAAGGACAAAGATTTCCAGCTTGcagcaggcagacactggaatacgtTTGTGTGTGACGAAGTGAGTGACgaagtgagggctttgcataggcgtTTTGTTATGTTTTGTTGTGGGGCTAGAGAAAAATATCTGGAAGGTGAAATAACATTATTAACCGGTTTCCATGCATTTaaaaataacggttctgttccgCAACAGCATGGATCACTTTTGTTCCAGGTTCCCTTTCTGTTCCTTGaaaaaaatgtagttaatttCAAATTTTCGGTtttgttccctgaaccggttccagccactgacacacacacctacgTACGGCCCTCTTCGCCCCTGCCAGGACAGCATTCCCCACATCCCCGAGAAATAGCCCCTCCCTCCCCGCTCCTCGTCTCCCAGAAATAAAGCAATCAGAGCCGAAGAAAAACTCCGGGAAAACCCGACGCAGTGCCTTGCACGTTTACTTTTAGTATGAGCCAAtccactctctccatctgtttggTTATTTATATGTATGGGTCATTAAGATGTATGATTTATTAGTCATTATATTTACTCTTCCCCTGTTTTTTTTATGGGTCTCTATTGATGATCTCTTCAGCGTGTTGAATTTCACAGCTGTCTGTGTATTATCCGTACGGAGTATTAGATGTGTCAGTACGGAGGAGCATACGAAGATTGTCCTtccagagacaaagagagggcaTGTACCTGGAGACTTTAAGAAAGAGGCCTTGGGGAGAGCTCTCCAGCCTGCCTCCTCTCACAGCAGCAGGAACAGGACAATACTGAGCAAATGTTTCCCACGTGGTTGGACACACAACCAGGATGGAACACACAACCAGGATGGAACACACAACCAGGATGGAACACACAACCAGGATGGAACACGCAACCAGGATGGAACACGCAACCAGGATGGAACACACAACCAGGATGGAACACACAACCAGGATGGAACACACAACCAGGATGGAACACGCAACCAGGATGGAACACGCAACCAGGATGGAACACACAACCAGGATGGAACACGCAACCAGGATGGAACACACAACCAGGATGGAACACACAACCAGGATGGAACACACAACCAGGATGGAACACACAACCAGGATGGAACACACAACCAGGATGGAACACACAACCAGGATGTGGTATATAGTGTGAGGTTTAGCTGAGGTAAAGGTGGTATGGGTgtgagaggaaagggaggggtTTTCGTCAAGATaatgtatgtactttttactccatacattttccctgacaccctaaAGTACTCGGAatggaatgcttagcaggacaggaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1940379 lncRNA upstream 9487 42810796 ~ 42812310 (+) True G1696342
TU1940373 lncRNA upstream 25197 42796362 ~ 42796600 (+) True G1696336
TU1940366 lncRNA upstream 31345 42788631 ~ 42790452 (+) False G1696330
TU1940367 lncRNA upstream 31345 42788631 ~ 42790452 (+) True G1696330
TU1940363 lncRNA upstream 34120 42787460 ~ 42787677 (+) True G1696328
TU1940452 lncRNA downstream 14720 42841812 ~ 42842015 (+) True G1696409
TU1940461 lncRNA downstream 27662 42854754 ~ 42854980 (+) True G1696418
TU1940466 lncRNA downstream 53429 42880521 ~ 42880866 (+) True G1696423
TU1940504 lncRNA downstream 77175 42904267 ~ 42909912 (+) True G1696447
TU1940508 lncRNA downstream 89203 42916295 ~ 42916896 (+) True G1696448
XM_021576633.2 mRNA upstream 47688 42745164 ~ 42774109 (+) False LOC110499501
XM_036955568.1 mRNA upstream 161787 42655757 ~ 42660010 (+) True LOC110499499
XR_005038025.1 mRNA upstream 223178 42594004 ~ 42598619 (+) False LOC118942074
XM_036956366.1 mRNA upstream 295151 42522537 ~ 42526646 (+) False LOC118942073
XM_036956365.1 mRNA upstream 311040 42484544 ~ 42510757 (+) False LOC110499605
XM_036955561.1 mRNA downstream 18954 42846046 ~ 42851739 (+) True tbxtb
XM_036956385.1 mRNA downstream 123857 42950949 ~ 43121895 (+) False LOC110499502
XM_036956387.1 mRNA downstream 310296 43137388 ~ 43148369 (+) False LOC110499564
XM_036956388.1 mRNA downstream 310296 43137388 ~ 43148369 (+) False LOC110499564
XM_036956386.1 mRNA downstream 310297 43137389 ~ 43148369 (+) False LOC110499564
TU1940344 other upstream 41248 42779999 ~ 42780549 (+) True G1696324
TU1939722 other upstream 294789 42522510 ~ 42527008 (+) False LOC118942073
TU1939742 other upstream 295160 42522559 ~ 42526637 (+) False LOC118942073
TU1939686 other upstream 310550 42509631 ~ 42511247 (+) True LOC110499605
TU1938999 other upstream 1203292 41618027 ~ 41618505 (+) True G1695272
TU1940630 other downstream 306535 43133627 ~ 43134013 (+) True G1696541
TU1940489 other downstream 310301 43137393 ~ 43138115 (+) True LOC110499564
TU1940662 other downstream 380467 43207559 ~ 43209518 (+) True G1696563
TU1941117 other downstream 796392 43623484 ~ 43626360 (+) True G1696904
TU1941123 other downstream 799296 43626388 ~ 43661355 (+) True G1696905

Expression Profile