RNA id: XM_036956385.1


Basic Information

Item Value
RNA id XM_036956385.1
length 3946
RNA type mRNA
GC content 0.53
exon number 22
gene id LOC110499502
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 42950949 ~ 43125594 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTCTCTTCCCAATCTTGCACTTTCACTGTTTCAGTGCTGCCacggcgaggagaggagaggaggctttcCAACCCACGTTTATCTACTCCTTGGAAGGCGAGTGAGGGGGAGACCCTTCACCACTACTGCTCTCGTCTATACGTTTACGTTACCGTGCTGGTAACGGACCACGTACTGATCACGACCACGGCATTCCCGGATCGGTTGGTCACGGGCTATTAGGACCTAGGACATTTAATCTCATTCTGGACCAACCGTTCCAGTTCTAGCAGCGAGCAGCGGGAGTTTGAGCAGAGAGGCACCGTACCCTGGTTGATATCCGTAGCGGGTCCCTTCTCGCGCTCTGCTCGCTCACAGGCAGACATGGAAGATGGTCCGTCTTCGACAAGCTGTTTTAGAAGGATCACGGACTGTTTTCTGGGCTCAAgTCTGACGGATGACCAAGTGAAGGATTATTTAACCCTTCACCCTCAGATGCTGGATGAGTTTGTATCGGAGAGCGTGAGTTCAGAGACGCTGGACAGATGGCACAAGAGGAAGAGCAGCGGTAGCCTGCctgcagAcacgtcatcatcatcatcagctaaAGAAGGCAGCAGGTACCAGGACAGTAACATGCAGAAGTTGGTGCATGACCTCACCAGTTGTCTGGAACAGTGTCTGGACACTAAGCTGCTTCTCTATGACCTGTGTACCATCATCAAAACAGCCACGAAAGCAGATGGATTTGCCCTTTATTTCATGGGAGAATGTAACAATagtgtgtgtttgtttaaacCAACGGTGGCTGAGGACGGTCCTCCCACCCTCATCCCAGCTGGCCCGGTCACGTTTGGGACCACCATCGCCACACACGTGGCCACAACACGCCAAACTCTGCTAGTAGAGGACATCACAGGGgaCCAGCGTTTCCCAGAAGGCACAGGTCAGGACTCAGACTCAGGGATTCATGTTCACTCTGTCCTGTGCCTCCCCATCCTCACGGCCATCGGTGACCTCATAGCTATCCTGGAGCTGCATCGGCACTGGGGCAATGAGCCCTTCAATACCAGCAACCAGGAGgtTGCGACGGCGAGTTTAGCATGGGCATCTGTAGCTATTCACCAAGTACAGGTGTGCAGAGGCCTAGCCAAACAGACGGAGCTCAATGACTTCCTGCTAGAAGTGTCAAAAACGTACTTTGACAACATTGTGGCAATAGATTCTCTACTTGAACATATAATGATATATGCAAAAAACCTGGTGAATGCGGACAGATGTGCACTGTTCCAGGTGGACCACAATAACAATGAACTGTACTCAGACCTGTTTGACATCGGGGAGGAGAACGAGGGCAAACCTGTCTTCAGGAAAACCAAAGAGATTAGGTTTTCTATAGAGAAAGGTATAGCGGGCCAAGTGGCACGGACGGGGGAGGTCCTTAACATCCCAGACGCCTATGCAGACCCACGCTTTAATAGAGAGGTGGACCTCTATACGGGATACACCACGCGGAACATCCTATGCATGCCCATCGTTTCCAGGGGGACCGTAATAGGGGTCGTACAGATGGTTAACAAGCTGAGTGGAAGTGCCTTCACCAAAACAGACGAGAACAACTTCAAGATGTTTGCCGTCTTCTGTGCTCTAGCCTTGCACTGTGCCAACaTGTACCACCGGATCAGGCACTCTGAGTGTATCTACAGGGTAACCATGGAGAAGTTGTCCTACCACAGTATCTGTACTTCAGAGGAGTGGAAGACCCTCACACAGCTGGACCTTCCTACGCCCCTATACAAAGAGATAGAACTgTTTCATTTTGACATTAGTCAGTTTGAGGAGCTGTGGCCGGCTGTCTTTGTATACATGGTCCACAACTCATGTGGAGAGACCAGTTTTGAGTTGGAGAAGTTGTGCAGGTTCACAATGTCTGTGAGGAAGAATTATCGGCGTGTTCCCTACCACAACTGGAAACATGCGGTGAACGTGGCTCACTGTATGTACGCCATACTGCAGAAGACCACCGGCATCTTCACTGAGATAGagAAGAAGGGTCTGCTGATAGCCTGTCTATGTCATGATCTGGACCATCGAGGATACAGTAACACCTACCTGCAGAAGTTTGACCATCCTCTAGCTGCCCTGTACAGCACATCTACAATGGAGCAGCACCACTTCTCCCAGACTGTATCCATCCTCCAGCTGGAAGGGCACAATATTTTCTCCAACCTGATTTCCAGTGAGTACGAGCAGGTGTTAGAGGTCATCCACAAGGCCATCATCGCTACAGATCTGGCGCTCTACTTCGGCAACCGCAAACAGCTAGCTGAACTActgagcactggagctctggacCTGGACAACCACCAacacagGGACCGTGTGATTGGTCTGATGATGACAGCATGTGACCTGTGTTCCGTTACCAAGCTGTGGCCAATCACGCGACTCACAGCCAATGATATCTACGCTGAGTTCTGGGctgagggGGATGAGATGAAGAAGATAGGTATACAGCCCATCCCTATGATGGACAGAGATAAGAAGGAAGAGGTTCCTCAGGGGCAGGTGGGGTTCTACAATGCTGTTGCACTCCCATGTTATACCACCTTATCTGAGCTCTTCCCCCCTTCTGGCCCTCTTCTACAAGCCTGCAAGGAGAACCTTGGCCAGTGGGAGAAGATAgtgaatggagaggaggaggacagtggaGTGAGAGGAGTGTGGGCTCCGTCAGAGCCTGTTGACCCCAGGATAGAGCCTGTTGACCCCAGGGCAGAGCCTGTTGACCCCAGGGCAGAGCCTGTTGATCCCAGGGCAGAGCCTGTTGACCCCAGGATAGAGCCTGTTGTCCCCAGGGCAGAGCCTGTTGACCCCAGGGCAGAGCCTGTTGACCCCAGGGCAGAGCCTGTTGACCCCAGGGCAGAGCCTGTTGACCCCAGGGTAGAGCCTGTTGACCCCAGGATAGAGCCTGTTGACCCCAGGGCAGAGCCTGTTGACCCCAGGGCAGAGCCTGTTGACCCCAGGGCAGAGCCTATTGACCCCAGGGTAGAGCCTGTTGACCCCATTGTAGAGCCCAGCACGGAGGAACCATCTAACCCTGACTCAGGCCCTGTGAAGGTGGACACCTGACTAGTAGTGAAGCCACTGCTCGCCCTCACTACCACGCAAGTCAATACACCCTCACTACCACATGCCCTCGCTACCACATGCCCTCACAATGTCCCCTGCCAGCAGGTGTGTGTACTTCCTGTCTGGACTTCCTATGTCAGCGACTCAATTCCTTCTGCAACAGGAAGGGGCGGGAAACATGCGTAGGGACGAGGGAAGATGATTGGTGGATTTACTGACAAGGGGATTATTTTCGGAAACACACAGTTACCTCATTgggtgaggaaggagaggaggtaacacAGACGTTGTCATCCACTCCTGTAGACACGGACGGAGGACCGCAggggtgtgttcattaggcaccaaacgcaAACAAACGGGCCGAAACAGGGAGAGACTACCTGGGCCGGTCCAATAAGAAACAGTTGTTTTACGAtttccgttgcaaaatgttttgcactgATGAATACAGCCGAGTGGGGATTCGGCACCAATCACCTGATCTACCAACCACCTGATCCACTAACCACCTGATCCACTAGTCACCGGATCCACCAGTCACCGGATCCACCAGTCACCTGATCCACCAGTCACCTGATCCACCAGTCACCTGATCCACCAGTCACCTGATTCAACAACCACCTGATCCACCAACCACCTGATCCACCAACCACCTGATCCACCAGTCACCGGATCCACCAGTCACCTGATCCACCAACCACCTGATCCACCAACCACCTGATCCAACAGTCACCGGATCCACCAGTCACCTGATCCACCAGTCACCTGATCCACCAACCACCAGATCCACCAGTCACCGGATCGACCAGTCACCTGATCCACCAACCACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1940521 lncRNA upstream 10671 42939281 ~ 42940278 (+) True G1696458
TU1940522 lncRNA upstream 11375 42938401 ~ 42939574 (+) False G1696458
TU1940508 lncRNA upstream 34053 42916295 ~ 42916896 (+) True G1696448
TU1940504 lncRNA upstream 41037 42904267 ~ 42909912 (+) True G1696447
TU1940466 lncRNA upstream 70083 42880521 ~ 42880866 (+) True G1696423
TU1940485 lncRNA downstream 3812 43125707 ~ 43128000 (+) False G1696432
TU1940486 lncRNA downstream 3812 43125707 ~ 43128000 (+) False G1696432
TU1940487 lncRNA downstream 3812 43125707 ~ 43128000 (+) True G1696432
TU1940632 lncRNA downstream 12266 43134161 ~ 43134694 (+) True G1696542
TU1940479 lncRNA downstream 28709 43150604 ~ 43155908 (+) True G1696431
XM_036955561.1 mRNA upstream 99210 42846046 ~ 42851739 (+) True tbxtb
XR_005038026.1 mRNA upstream 123857 42803589 ~ 42827092 (+) False LOC118942075
XM_036956384.1 mRNA upstream 123857 42821797 ~ 42827092 (+) False LOC118942075
XM_021576633.2 mRNA upstream 176840 42745164 ~ 42774109 (+) False LOC110499501
XM_036955568.1 mRNA upstream 290939 42655757 ~ 42660010 (+) True LOC110499499
XM_036956387.1 mRNA downstream 15493 43137388 ~ 43148369 (+) False LOC110499564
XM_036956388.1 mRNA downstream 15493 43137388 ~ 43148369 (+) False LOC110499564
XM_036956386.1 mRNA downstream 15494 43137389 ~ 43148369 (+) False LOC110499564
XM_036955569.1 mRNA downstream 249798 43371693 ~ 43402764 (+) True LOC110510394
XM_036955570.1 mRNA downstream 326819 43448714 ~ 43494181 (+) True LOC118942021
TU1940344 other upstream 170400 42779999 ~ 42780549 (+) True G1696324
TU1939722 other upstream 423941 42522510 ~ 42527008 (+) False LOC118942073
TU1939742 other upstream 424312 42522559 ~ 42526637 (+) False LOC118942073
TU1939686 other upstream 439702 42509631 ~ 42511247 (+) True LOC110499605
TU1938999 other upstream 1332444 41618027 ~ 41618505 (+) True G1695272
TU1940630 other downstream 11732 43133627 ~ 43134013 (+) True G1696541
TU1940489 other downstream 15498 43137393 ~ 43138115 (+) True LOC110499564
TU1940662 other downstream 85664 43207559 ~ 43209518 (+) True G1696563
TU1941117 other downstream 501589 43623484 ~ 43626360 (+) True G1696904
TU1941123 other downstream 504493 43626388 ~ 43661355 (+) True G1696905

Expression Profile