RNA id: TU1940492


Basic Information

Item Value
RNA id TU1940492
length 4627
lncRNA type sense_over
GC content 0.45
exon number 1
gene id LOC110499502
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 42950949 ~ 43125594 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGACCCCAGGGTAGAGCCTGTTGACCCCATTGTAGAGCCCAGCACGGAGGAACCATCTAACCCTGACTCAGGCCCTGTGAAGGTGGACACCTGACTAGTAGTGAAGCCACTGCTCGCCCTCACTACCACGCAAGTCAATACACCCTCACTACCACATGCCCTCGCTACCACATGCCCTCACAATGTCCCCTGCCAGCAGGTGTGTGTACTTCCTGTCTGGACTTCCTATGTCAGCGACTCAATTCCTTCTGCAACAGGAAGGGGCGGGAAACATGCGTAGGGACGAGGGAAGATGATTGGTGGATTTACTGACAAGGGGATTATTTTCGGAAACACACAGTTACCTCATTgggtgaggaaggagaggaggtaacacAGACGTTGTCATCCACTCCTGTAGACACGGACGGAGGACCGCAggggtgtgttcattaggcaccaaacgcaAACAAACGGGCCGAAACAGGGAGAGACTACCTGGGCCGGTCCAATAAGAAACAGTTGTTTTACGAtttccgttgcaaaatgttttgcactgATGAATACAGCCGAGTGGGGATTCGGCACCAATCACCTGATCTACCAACCACCTGATCCACTAACCACCTGATCCACTAGTCACCGGATCCACCAGTCACCGGATCCACCAGTCACCTGATCCACCAGTCACCTGATCCACCAGTCACCTGATCCACCAGTCACCTGATTCAACAACCACCTGATCCACCAACCACCTGATCCACCAACCACCTGATCCACCAGTCACCGGATCCACCAGTCACCTGATCCACCAACCACCTGATCCACCAACCACCTGATCCAACAGTCACCGGATCCACCAGTCACCTGATCCACCAGTCACCTGATCCACCAACCACCAGATCCACCAGTCACCGGATCGACCAGTCACCTGATCCACCAACCACCTGATCCATCAACCACCGGAACCACCAACCACCTGATCCACCAACCACCTGATCCACCAGTCACCTGATCCACCAGTCACCTGATTCAACAACCACCTGATCCACCAACCACCTGATCCACCAACCACCTGATCCACCAGTCACCGGATCCACCAGTCACCTGATCCACCAGTCACCTGATCCACCAACCACCTGATCCACCAGTCACCGGATCGACCAGTCACCTGATCCACCAACCACCTGATCCACCAACCACCTGATCCATCAACCACCGGAACCACCAACCACCTGATCCATCAACCACCTGATCCACCAACCACCTGATCCACCATTCACCTGATCCACCAGTCACCGGATCCACCAGTCACCTGATCCACCAACCACTTGGGAACCAGTCACCTGATCCACTCCACTTCTTGGGAACTGAATGGATCTTTATGTCtgcgtttttgtttgttttgatttgatttgaacgttAATCCAATGTTATTGTTTATTTTGGCTGGTTTGTTTTATGTTCTGGATATGCAGAGGCCTTAGTCTTTACACTCTAAACCTTTATGTAAAAAGGCAAGAGGTTAAATGTGGACTGTTTTGTCTGTTTTGTTTGTTGGTTCTGACTTCATGAAACGGTAGCCTATCTCCtaaagcactacttttgaccagggcccaacatAACTAATATAAATTCCTCATAACTTCTGGACAAATGATCCCCCTGTAGTACCTGGTCAAAGGTCGTGCACTCTGAAGGAGATATGATACCAGTTGGGGTCGCAGCCTATTGAAATGGTACTGTTTGTTTGCTTGCTGTGGTAGACTGACTGACTTATCCCATGCCAAACTACTTGGAAGGAGGTTGTTGGTTCtaaaacaagagagacagaaagaatgtTTATCGTGTTGTGGAAAAGAAGCCTCTAGAATGTCTTCTAGAATGTTTTTTTGTCACTTTGAGCAACAAACAAATAATGTTTTTGGAGTACTTGAATGAAGACATACAGAACATACATATTATTCTATTCAGAGATGGCAAAACAGAGCAGAAATCCCCTCACGGCGTCTTATTATCaaagcacagacagacaaagtGTGACCCAGCCGGGCTGAGTTAGATAATGTTAACACATAGCTGGCCGTGTCACACGAAAGTCACAATGTTCCATGCAGAATTGGCCcctagacctgggttcaaacaacatttaaaataatttcaaatactttatctgggcttgattgagcttgcctggcataATGGAATAAATAGAGGAGTTGCGAGTTTAAACCCCGCCCATCTATGCAGACTAAAGCAATCactaaaagtatttgaaagatttcaaccCAGGTCTGCACCCCACCACCGTGCTATCAGCCACTGGTGTTGCCACAGGAACCTGCAACTGACTACAAGTCAGTCTTTTGTCTGATTATTGGAACCCAGAGCCATGGGCAATCAGTCTTTAGGTTCTAGAACACAGAACCATGGGCAATCAGTCTTTAGGTTCTAGAACACAGAACTTTGGGCAATCAGTCTTTAGGTTCTAGAACACAGAACCATGGGCAATCGGTCTTTTAGGTTCTAGAACACAGAATTTTGGGCAATCAGTCTTTTAGGTTCTAGAACAGGAACCATGGGCAATCAGTTTTTAGGTTCTAGAACACAGAACTTTGGGCAATCAGTCTGTTTTTAGGCTTTccttgtagcctggtcccagatctgtttgcacTATCTTACCAACTAGAACAGCTCCTGAGTCAAGTCCAATGGCTGTTCTCTGCACAGAGTTCTTAACACacaggaggagcaggacagaCACACATTGATACAATATTTATAAAAAATCTATAGATATCGATTGATAGCCAGAACATTGTCAAGATGGCCGACATAAGGAGTGCGATCTTTTTTTTCATTGCTTTACCCATTATGCCATTCACATACAAGTATCATttataatttgaaaacaaacatttTGTGAAAAATAGTATATACCTCAATAACCTGAGATCGACAGTCATGTTCTTTGATATTTCCCTGACTACTTCCTGTTGTATTCATAAAGCCGTTGAGATACATTAAATTAATATGATGTAATATTATTTAATATTTAATATGATTTATACCAGTGGATAAAATGTCAAGATgccatctttttttttttcttttgcaAAGTTGTTTGCAATTCTCTGCAATTCAAAACTGTTTTTGTGaagagctgagggatggggctggagaaatgaaGCCACTCTCAATATAGGCAAAGACAGCTATATATATGCAAGGGACTGACCACCCATGATATCAAAAGCATAGTATtagccatgttttgaggctatacagtaaGATAAGCTAAAATGTTGGGTTCTGATAAGGGTActtacagttgaactaagctcatgagccATTTACAAGTAATATTCGTAAAGGATCAATGCATATACagcttcggaaagtattcagaccccttgactttttccacattttgatacgttacagccgtattctaaaatgtattaaattatagCAAATCGTcagcaatcgacacacaatagTCTATAATGAAAacccaaacttttttttaaacatttttgaaaatgtattaataataaaaaacagataccttatttatataaagtgttcagaccctttgctatgagactcaacattgagctcaggtgcatcctgtttccattgatcatccttgagatgtttctacaacgtgattggagtccacctgtggtaaactcaatATGATtctacatgatttggaaaggcacaaacctgtctatataaggtcccacagttgacagtgaatgtcggagcaaaaaccaagccatgagggacatgattgtgtcaaggcacagatctggggaagggtaccaaaacatttatgcagcattgaaggttcccaagaacacagtggcctccatcgttcttaaatggaagaagtttggaaacaccaagactcttccttgagctggcggcccggccaaactgagcaatcgggggagaagggccttggtcagggaggtgcccaagaacccgatggtcactctgacagagctctagagttcctctgtggagatgggagaaccttccagaagcacaaccatctctgcagcattccaccaatcaggactttatggtagagtggccagacggaagccactcctcagtaaaaggcacataatagcccacttggagtttgccaaagacacttaaagactctcagaccatgagaaacaagattctttggtctgatgaaaccaagattgaagtctttggcctgaatgccaagcatcacttctggaggaaaccaggcaccatccctacggtgaagcatggtggtggcagatccatgttgtggggatgtttttcagtggcagggactgggagactaatcgggattgagggaaagatgaacggagcaaagtacagagagatcattgatgaaaacctgctccagaacctgatcgaacatctctggagagatctgatcagcaatgttccccatccaacctgacagagcttgagaggttctgcagagaagaatgggagaaactctccaaatacaggtgtcccaagcttgtagtgtcatacccaagaagactcacagctgtaatcacttttaacaaggcactgagtaaaggttctgaatacttatgtgaatgtgatatttcatttttctATATATTTAAAT

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007165 signal transduction biological_process
GO:0046872 metal ion binding molecular_function
GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1940616 lncRNA upstream 9899 43107649 ~ 43111069 (+) True G1696529
TU1940615 lncRNA upstream 11127 43106753 ~ 43109841 (+) True G1696528
TU1940611 lncRNA upstream 14293 43100523 ~ 43106675 (+) False G1696526
TU1940613 lncRNA upstream 15102 43100523 ~ 43105866 (+) False G1696526
TU1940612 lncRNA upstream 15102 43104460 ~ 43105866 (+) True G1696526
TU1940485 lncRNA downstream 113 43125707 ~ 43128000 (+) False G1696432
TU1940486 lncRNA downstream 113 43125707 ~ 43128000 (+) False G1696432
TU1940487 lncRNA downstream 113 43125707 ~ 43128000 (+) True G1696432
TU1940632 lncRNA downstream 8567 43134161 ~ 43134694 (+) True G1696542
TU1940479 lncRNA downstream 25010 43150604 ~ 43155908 (+) True G1696431
XM_036955561.1 mRNA upstream 269229 42846046 ~ 42851739 (+) True tbxtb
XR_005038026.1 mRNA upstream 293876 42803589 ~ 42827092 (+) False LOC118942075
XM_036956384.1 mRNA upstream 293876 42821797 ~ 42827092 (+) False LOC118942075
XM_021576633.2 mRNA upstream 346859 42745164 ~ 42774109 (+) False LOC110499501
XM_036955568.1 mRNA upstream 460958 42655757 ~ 42660010 (+) True LOC110499499
XM_036956387.1 mRNA downstream 11794 43137388 ~ 43148369 (+) False LOC110499564
XM_036956388.1 mRNA downstream 11794 43137388 ~ 43148369 (+) False LOC110499564
XM_036956386.1 mRNA downstream 11795 43137389 ~ 43148369 (+) False LOC110499564
XM_036955569.1 mRNA downstream 246099 43371693 ~ 43402764 (+) True LOC110510394
XM_036955570.1 mRNA downstream 323120 43448714 ~ 43494181 (+) True LOC118942021
TU1940344 other upstream 340419 42779999 ~ 42780549 (+) True G1696324
TU1939722 other upstream 593960 42522510 ~ 42527008 (+) False LOC118942073
TU1939742 other upstream 594331 42522559 ~ 42526637 (+) False LOC118942073
TU1939686 other upstream 609721 42509631 ~ 42511247 (+) True LOC110499605
TU1938999 other upstream 1502463 41618027 ~ 41618505 (+) True G1695272
TU1940630 other downstream 8033 43133627 ~ 43134013 (+) True G1696541
TU1940489 other downstream 11799 43137393 ~ 43138115 (+) True LOC110499564
TU1940662 other downstream 81965 43207559 ~ 43209518 (+) True G1696563
TU1941117 other downstream 497890 43623484 ~ 43626360 (+) True G1696904
TU1941123 other downstream 500794 43626388 ~ 43661355 (+) True G1696905

Expression Profile