RNA id: XM_036956388.1


Basic Information

Item Value
RNA id XM_036956388.1
length 2258
RNA type mRNA
GC content 0.55
exon number 5
gene id LOC110499564
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 43137388 ~ 43148369 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTCAGTCAGTACTCTGAGTCTATTGATCCTAAGTGCCTCTTGTTCTCACACCTTGTCAACAACAGGCACCCTGGTCCTCTCCTGTCCAGCTGTCCCAGACCTCCAGCGGAGTGTGGACGTCTTTCTCTGCCTAccaacactcccccccccccttctgcttCGACTCCGTCTGCCTGGATCCAAATGTGGATTTCTTCCTCTTAGACCTACCCgtctagacccccccccccacccctgtgCTGtgacttcctctctgtctgtctcgccaCCATGCTGCCGCGCACCTCAGCCttccttctgctctctctctgcctctcctggGGGATGTCTGCTTCTCTGGTCAGGAACATCACTCCTGAAGAGGAAGTCCCAGAAGCAGAAACCAAGTTCGGGGATGATACCGTCACTGCTACCGAGGGTGATAccgttgctgctgctgctgctaccgaGGGTGATAccgttgctgctgctgctgctaccgagggtgatactgttgctgctgctaccgAGGGTGATACCGTGGGGGCAGATAGCCTGGTTGTTGATGATACGCCTATCGCTGTAGATATCAGGGTGGAGGGTGATACCGTGGGGGCAGATAGCCTGGTTGTTGATGATACGCCTACCGCTGTAGATATCAGGGTGGAGGGTGATACCATGGGGGCAGATAGCCTGGTTGTTGATGATACGCCTACCGCTGTAGATATCAGGGTGGAGGGTGATACCATGGGGGCAGATAGCCTGGTTGTTGATGATACGCCTACCGCTGTAGATATCAGGGTGGAGGGTGATACCGTGGGGGCAGATAGCCTGGTTGTTGATGATACGCCTACCGCTGTAGATATCAGGGTGGAGGGTGATACCGTGGGGGCAGATAGCCTGGTTGTTGATGATACGCCTACCGCTGTAGATATCAGGGTGGAGGGTGATACCGTGGGGGTAGATAGCCTGGTTGTTGATGATACGCCTACCGCTGTAGATATCCGGGTGGAGGGTGATACCGTGGGGGCAGATAGCCTGGTTGTTGATGATACGCCTACCGCTGTAGATATCAGGGTGGAGGGTGATACCGTGGGGGCAGATAGCCTGGTTGTTGATGATACGCCTGCAGTGGAGGAACCTGTAGAAGACACCCCAGTGGCCGAAGACCTGGTGGCCGACAAGCCTGTTGCAGATACCGTTGTACCTGGGGCATTTGTAGTCAAGGAAGCAGTTGCGGACTCCCCTGTTGCTGATGCCGTTGTAGCTGGGGCTTTTGTAGTCAAGGAAGCAGTTGCGGACTCCCCTGTTGCTGATGCCGTTGTAGCTGGGGAATTTGTAGTCAAGGAAGCAGTTGCGGACTCCCCTGTTGCTGATGCTCCGCTAGTAAACGCCCCTGTCGTGGCAGATGAAGTCCCAGACACAGAGGCCCTCACAGCGGACATGCCAGTGGTGGAAGACCCTGCTTACATGGATCCGGAGACCCTTGTTAAAGAGGCCCTGATAACAGAAGCCATGATTAAAGAGTTGTCTGcccaggtggaggaggaagacctCGCTAAAGAGACTGAGATTCAGGACGCCATCTTGAAAGATTTGGCTGACCAGGAGGCACTAGAAAAAGCGACAGAGGCCATTGAAGAGgcagcagaggcagaggcagaagcTCCAGCTACAGCCAGCCCTGTGGTACCTGTCGTCGAAGCCCAGGAAGGGGACTCTGACTGGGGCTTGGTTTCCATCAAAGAGAGCCTCCAGGCAGCCAATGGATACTTTGACTCCCTGGTGGAATTGATGGGGGGACGCAACGGATTGTGTCAGTACAAATGCAAATACGGTAAGACACCTGTGCATCGCATTGGTTATGTGACCCCAGAGCCCAATGGTTGCAGCTCCGACCTCCTAGGATTCCAGGTACCAGATAGTTTTGACATGGGCATCCCAGCCATGACTCAGTGCTGTAACCAGCTGGACAGTTGCTATGACACCTGTGGCTCCGACAAAAACCGCTGTGACTCCAAGTACCGCTTGTGTCTCCACGCTATTTGCTCTGACCTGAAGAAGAGCCTGGGGCTTGTGTCAAAGGTCAAAGccTGTGAGACAGTAGCAGATACTCTGTACAACACAGTGTGGACGCTGGGCTGCAGATCCTTCATGAACAGCCAGAGGGAAGCATGTCactgtgagggagaggagagggacgagCTGTAGAGGACCAGGCTGGGACACTACACAACACCTCCCAGCCCTAGACCAAACTGGGGCACTACACTACTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1940632 lncRNA upstream 2694 43134161 ~ 43134694 (+) True G1696542
TU1940485 lncRNA upstream 9388 43125707 ~ 43128000 (+) False G1696432
TU1940486 lncRNA upstream 9388 43125707 ~ 43128000 (+) False G1696432
TU1940487 lncRNA upstream 9388 43125707 ~ 43128000 (+) True G1696432
TU1940492 lncRNA upstream 11794 43120968 ~ 43125594 (+) True LOC110499502
TU1940479 lncRNA downstream 2235 43150604 ~ 43155908 (+) True G1696431
TU1940646 lncRNA downstream 9444 43157813 ~ 43158134 (+) True G1696549
TU1940651 lncRNA downstream 23094 43171463 ~ 43172287 (+) True G1696553
TU1940652 lncRNA downstream 24071 43172440 ~ 43172684 (+) True G1696554
TU1940658 lncRNA downstream 50040 43198409 ~ 43225842 (+) True G1696559
XM_036956385.1 mRNA upstream 15493 42950949 ~ 43121895 (+) False LOC110499502
XM_036955561.1 mRNA upstream 285649 42846046 ~ 42851739 (+) True tbxtb
XR_005038026.1 mRNA upstream 310296 42803589 ~ 42827092 (+) False LOC118942075
XM_036956384.1 mRNA upstream 310296 42821797 ~ 42827092 (+) False LOC118942075
XM_021576633.2 mRNA upstream 363279 42745164 ~ 42774109 (+) False LOC110499501
XM_036955569.1 mRNA downstream 223324 43371693 ~ 43402764 (+) True LOC110510394
XM_036955570.1 mRNA downstream 300345 43448714 ~ 43494181 (+) True LOC118942021
XM_036956406.1 mRNA downstream 449718 43598087 ~ 43614283 (+) False LOC110499505
XM_036956405.1 mRNA downstream 449719 43598088 ~ 43615698 (+) False LOC110499505
XM_021576651.2 mRNA downstream 828911 43977280 ~ 43987101 (+) True LOC110499517
TU1940630 other upstream 3375 43133627 ~ 43134013 (+) True G1696541
TU1940344 other upstream 356839 42779999 ~ 42780549 (+) True G1696324
TU1939722 other upstream 610380 42522510 ~ 42527008 (+) False LOC118942073
TU1939742 other upstream 610751 42522559 ~ 42526637 (+) False LOC118942073
TU1939686 other upstream 626141 42509631 ~ 42511247 (+) True LOC110499605
TU1940662 other downstream 59190 43207559 ~ 43209518 (+) True G1696563
TU1941117 other downstream 475115 43623484 ~ 43626360 (+) True G1696904
TU1941123 other downstream 478019 43626388 ~ 43661355 (+) True G1696905
TU1941142 other downstream 521195 43669564 ~ 43670353 (+) True G1696916
TU1941505 other downstream 718860 43867229 ~ 43886750 (+) False G1697152

Expression Profile