RNA id: XM_036955569.1


Basic Information

Item Value
RNA id XM_036955569.1
length 525
RNA type mRNA
GC content 0.55
exon number 3
gene id LOC110510394
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 43371693 ~ 43402764 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgTACCGCTTGCGGGTGTTGTCGGCGGCGGTTGTGGGGCTTGTGCAGTTGTCACGGCGTTACCATGGTGAGGCTGTAAGGGGCGGGGCCAGTAGGAGGAGACTGATGCTTGCAGCTCTGGTGGGTGTGACCTCGGCCAACGCTGGACTGCTCTGGACGAGAGCCTACGCAGACGCCGATCCGTCCGTCAAGCACAGCCAGCGTCCcgaggagaaggaggagcagtTTGTGAAAGAGGCTGAGTCTGAGAGTTTTGTGGAGGCCAGTggcagagaggagggtgaggaagaCGGAGGGGAcggaaaaaagaagaagaaacaacgAACAGGATTTCGTGACCGCAAGgTGATGGAGTATGAGAATAGGATAAGAGCCTACTCCACTCCAGACAAGATCTTCCGTTACTTCGCCACGCTGAAGATCATCAGTGAGCAGGGAGATGCAGAGGTTTACATGACTCCACACGACTTTGTCCGCTCAATCAGCCCAAATGAGAAACAGCCAGAGAGTGAGTCTAAAGTTTaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1940974 lncRNA upstream 709 43370764 ~ 43370984 (+) True G1696818
TU1940972 lncRNA upstream 2651 43368230 ~ 43369042 (+) True G1696816
TU1940961 lncRNA upstream 17176 43354283 ~ 43354517 (+) True G1696807
TU1940956 lncRNA upstream 20450 43350115 ~ 43351243 (+) True G1696804
TU1940944 lncRNA upstream 24295 43347127 ~ 43347398 (+) True G1696798
TU1941028 lncRNA downstream 16558 43419322 ~ 43419563 (+) True G1696845
TU1941029 lncRNA downstream 17392 43420156 ~ 43420357 (+) True G1696846
TU1941031 lncRNA downstream 17714 43420478 ~ 43421253 (+) False G1696847
TU1941030 lncRNA downstream 18424 43421188 ~ 43421746 (+) True G1696847
TU1941043 lncRNA downstream 25902 43428666 ~ 43428933 (+) True G1696851
XM_036956387.1 mRNA upstream 223324 43137388 ~ 43148369 (+) False LOC110499564
XM_036956388.1 mRNA upstream 223324 43137388 ~ 43148369 (+) False LOC110499564
XM_036956386.1 mRNA upstream 223324 43137389 ~ 43148369 (+) False LOC110499564
XM_036956385.1 mRNA upstream 249798 42950949 ~ 43121895 (+) False LOC110499502
XM_036955561.1 mRNA upstream 519954 42846046 ~ 42851739 (+) True tbxtb
XM_036955570.1 mRNA downstream 45950 43448714 ~ 43494181 (+) True LOC118942021
XM_036956406.1 mRNA downstream 195323 43598087 ~ 43614283 (+) False LOC110499505
XM_036956405.1 mRNA downstream 195324 43598088 ~ 43615698 (+) False LOC110499505
XM_021576651.2 mRNA downstream 574516 43977280 ~ 43987101 (+) True LOC110499517
XR_002469994.2 mRNA downstream 621255 44024019 ~ 44028357 (+) True LOC110499607
TU1940662 other upstream 162175 43207559 ~ 43209518 (+) True G1696563
TU1940489 other upstream 233578 43137393 ~ 43138115 (+) True LOC110499564
TU1940630 other upstream 237680 43133627 ~ 43134013 (+) True G1696541
TU1940344 other upstream 591144 42779999 ~ 42780549 (+) True G1696324
TU1939722 other upstream 844685 42522510 ~ 42527008 (+) False LOC118942073
TU1941117 other downstream 220720 43623484 ~ 43626360 (+) True G1696904
TU1941123 other downstream 223624 43626388 ~ 43661355 (+) True G1696905
TU1941142 other downstream 266800 43669564 ~ 43670353 (+) True G1696916
TU1941505 other downstream 464465 43867229 ~ 43886750 (+) False G1697152
TU1941512 other downstream 464465 43867229 ~ 43904858 (+) False G1697152

Expression Profile