RNA id: TU1940982


Basic Information

Item Value
RNA id TU1940982
length 703
lncRNA type read_through
GC content 0.44
exon number 2
gene id LOC110499505
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 43552789 ~ 43615700 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtacctatgatgacaattacaggcctcatctttttaagtgggagaacttgcacaattggtggctgactaaatacttttttgccccactgtatatgggggattggaagtgcagacaattacattgatggaagctactcCAAAACATTCACTAATTTGTTTAACATCACAAGTAAACACAAAAGTGATGACATTACGTAAATAAATGGTATCGGATTGCAGGAAGTTAATTGTTTTCTTACCTCAAGACTAAAACTAGTTGgaaagctatttttttttttagtcACGACCTGTGTACATTTTTGTTGGCTCGTCCGTTGCCGTGGGTGACGAATCCACTGTAGCACCAAGGGGTGTGGTCTAAAATGTGACTCACTGCCCTGTCCCCCTAATGGCACCTTGGTCCCTATGccctctggtcaaaaggagtgcactatagagggaacgaGGTGCCATGTGGGACGGAGACATCTCTAGCAACAtgctcgtgtgcccccccccccaccccgtcAAGCCTGTTTTGCAGTGTCCCACTCAGCCAACCAATGTGCTGACTGACCTCACCCTGTTTATGCTAATCAATGTTTCTAATGTAACGATGGAGAGCTTGTTGTGATCAATAATCAATGGCTGACGGCCTCGCTGTTCAGCCTGAAACTAATCGATCGGTCAATTTTAACTGAAATAAAATGATCCCAAATCCACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1941005 lncRNA upstream 1595 43537157 ~ 43551194 (+) True G1696823
TU1941074 lncRNA upstream 55689 43496133 ~ 43497100 (+) True G1696871
TU1941071 lncRNA upstream 60217 43492364 ~ 43492572 (+) True G1696870
TU1941070 lncRNA upstream 62434 43488128 ~ 43490355 (+) True G1696869
TU1941069 lncRNA upstream 63040 43487901 ~ 43489749 (+) False G1696869
TU1941115 lncRNA downstream 5500 43621200 ~ 43621692 (+) True G1696903
TU1941129 lncRNA downstream 17609 43633309 ~ 43633743 (+) True G1696909
TU1941138 lncRNA downstream 49744 43665444 ~ 43665678 (+) True G1696913
TU1941139 lncRNA downstream 50402 43666102 ~ 43666576 (+) False G1696914
TU1941140 lncRNA downstream 50402 43666102 ~ 43712664 (+) True G1696914
XM_036955570.1 mRNA upstream 58608 43448714 ~ 43494181 (+) True LOC118942021
XM_036955569.1 mRNA upstream 150025 43371693 ~ 43402764 (+) True LOC110510394
XM_036956387.1 mRNA upstream 404420 43137388 ~ 43148369 (+) False LOC110499564
XM_021576651.2 mRNA downstream 361580 43977280 ~ 43987101 (+) True LOC110499517
XR_002469994.2 mRNA downstream 408319 44024019 ~ 44028357 (+) True LOC110499607
XM_021576648.2 mRNA downstream 418788 44034488 ~ 44055611 (+) False LOC110499515
XM_036956410.1 mRNA downstream 418794 44034494 ~ 44055611 (+) True LOC110499515
XM_036955528.1 mRNA downstream 475700 44091400 ~ 44134492 (+) False capn2
TU1940662 other upstream 343271 43207559 ~ 43209518 (+) True G1696563
TU1940489 other upstream 414674 43137393 ~ 43138115 (+) True LOC110499564
TU1940630 other upstream 418776 43133627 ~ 43134013 (+) True G1696541
TU1940344 other upstream 772240 42779999 ~ 42780549 (+) True G1696324
TU1939742 other upstream 1026152 42522559 ~ 42526637 (+) False LOC118942073
TU1941117 other downstream 7784 43623484 ~ 43626360 (+) True G1696904
TU1941123 other downstream 10688 43626388 ~ 43661355 (+) True G1696905
TU1941142 other downstream 53864 43669564 ~ 43670353 (+) True G1696916
TU1941505 other downstream 251529 43867229 ~ 43886750 (+) False G1697152
TU1941512 other downstream 251529 43867229 ~ 43904858 (+) False G1697152

Expression Profile