RNA id: XM_036956416.1


Basic Information

Item Value
RNA id XM_036956416.1
length 4350
RNA type mRNA
GC content 0.50
exon number 23
gene id LOC110499567
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 44135009 ~ 44181809 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGACGGCACGGAACGTGCGCTACTGCTCGGCTGAACCACCACTGTGCACCGTTTAACGTTACACCCCCCACACACTGTTCTGAGATTTATACGATTCCGTAGTAAACTGGAAGTCTGGCACGTTACTAGGAAAAACATCAAAGCAGGTGTCTTCAAAGTGTATGTCAGGGGGAATCTCTGCTAGCATAGCCACCAGCAGGCTACGAGCCGAGGGAATGGGCTCCAACGACCACGCCGTACCCTTCCTTAACCAGGACTATGAGGCTCTGAGGCAGGAGTGTCTGGAGACGGGGTGTCTGTTCCAGGACCCCTCCTTCCTAGCCGAACCTCCCTCTCTGGGCTTCAAGGAACTGGCCCCCTACTCTGCCAAGACCAGGGACGTGGAATGGATGAGACCcacgGAGCTGACAGATGACCCTCAGTTCATCCTGGGAGGAGCTACCAGAACAGACATCTGCCAGGGAGCGCTGGGTGATTGCTGGCTCCTAGCAGCCATAGCCTCTCTAACCCTTAATGAGAGGCTGCTCCACCGAGTGGTCCCTCATGGTCAGTCCTTCCAAGAGGACTACGCTGGGATCTTCCACTTTCAGtTCTGGCAGTTTGGTGAGTGGGTGGACGTGGTGATTGATGACCGGCTGCCGACGAAGAATGGAGAGCTCATGTTCGTCCACTCGGCCGAGGGCAATGAGTTCTGGAGCGCCCTGCTGGAGAAGGCCTACTCCAAGCTGAATGGTTCCTACGAGGCTCTGTCTGGAGGCAGCACCACAGAAGGTTTTGAGGACTTCACCGGTGGTGTCTCTGAGATGTACGATCTCCGGAAGGCTCCACGGGACCTGTACAGGATCATCAGCAAAGCCCTGGACAGAGGCTCATTGCTGGGCTGCTCCATCGACATCACCAGTGCCTTTGACATGGAGTCAGTCACGTTCAAGAAGCTGGTGAAAGGACATGCTTACTCAGTCACCGGCCTGAAGCAGGTGGACTACCAGGGTCAGGTGGAGAGGCTGATCAGGGTGAGGAACCCCTGGGGACAGGTGGAGTGGACTGGGGCCTGGAGCGACAATTCTCCTGAGTGGGATGAGTTGGATCCAACTGAGAGAGAGGACCTGCATCTacagatggaggatggagagttCTGGATGACGTTCCAGGAGTTCCTGAGGCAGTTTTCCCGTCTGGAGATATGCAACCTGACGGCGGACGCTCTGAGTGAGGACGGCCTCAGCCACTGGAACACCATCAAGTTCCACGGCATGTGGAGACGGGGGAGTACCGCCGGGGGCTGCCGCAACCACCCCAACACGTTCTGGATCAACCCCCAGTATAAGATCACTCTGCTAGAGGAGGACGACGACCCTGAGGATGACGAGGTGGCCTGTAGCTTCCTGGTGGCTCTGATGCAGAAGGATAGGAGGAGGTAccggggacagggacaggacatGCACACCATCGGGTTCGCCATCTACGAGATTCCAGAAGAGTACAGGGGCTGTCAGAACGTGCACCTAAAGAAAGACTTCTTCCTGACCCACTCATCCTGCGCTCGCTCGGAGACCTTCATCAACCTGAGAGAGGTCAGCAACCGTCTCCGTCTGCCTCCAGGAGAATACCTCATCGTCCCCTCCACTTTCGAGTCTGGGCAGGAGGCCGACTTTGTCCTCCGAGTCTTCACTGAGAAACAGTCCGagacagaAGAGCTTGATGACATCATATCTGCAGACCTGGAAGATGAGGACCACATCAGTGAAGATGACGTCGACGAAGCTTTCAGATCCATGTTTGCTCAGCTTGCAGGAGAGGACATGGAGATATCTGTCCGTGAGCTCAGGACCATCCTGAACCGGGTGGTGACTAGACACAAAGACCTGAAGACAGACGGTTTCAGTATGGAGTCCTGTAGGACCATGGTCAATCTCATGGATAAAGATGGCAGTGCCCGTCTCGGCCTGATAGAGTTCCAAATCCTCTGGAATAAGATCAGGAAGTGGCTGGTCATCTATAGAGAATATGACATGGACAAGTCAGGATCCATGAGCTCCTATGAGATGCGACTTGCTGTGGAGTCGGCAGGTTTTAAACTGAACAACAGGCTGAATCAGGTCCTGGTGGCTCGCTATGCTGAGAACGAGGCCATAGACTTTGACAACTTCATCTGCTGTCTGGTCAAACTGGAAGCCATGTTTAGATCTTTCCAGCAACTAGACAAAGAGGGAGAAGGTGTGGCTGAGATGAACATCACTGAGTGGCTTTATATGACCATGTGTGGTTGAAGAGGACCAGTCTTATCCCAGGAGACAGAACAGCCAAGTGCCCGGCAGAGTGGCTCTTCCCTGGGACCATGAAGAGCTCCCTAGCCTTACTGTCCTCTGCCTGATCCTGGACTATAGGGCTGACCTGTACTGTGCTGACTCAGATGTTTTATTTccacattgtcctttccagcacgGCTCCAGCTACTATGGTGACAGCATAACCAGTTCGGTTCAGTTCGGCCCTATAGTGTGAATCAGTTACTCCTGCCAATCTACACTACAGCACGCCACCTCACCCACGCCACCTCAGCCTGCCAATCTACACTACAGCACGCCACCTCACCCACGCCACCTCAGCCTGCCAATCTACACTACAGCACGCCACCACACCCACGCCACATCAGCCTGCCAATCTACACTACAGCACACCAGATCACCCACGCCACCTCAGCCTGCCAATCTACACTACAGCACGCCACCACACCCACGCCACATCAGCCTGCCAGCTACATTACAGCACACCCACACCACCTCAGCCTGCCAGCTACATTACAGCACACCcactccacctcacctcacccacGCCAGCTACATTACAGCACTCCCACTCCACCTCAGCCTGCCAGCTACATTACAGCACACCCACGCCACCTCACCCACTCCACCTCACCCACGCCACCTCACccactccacctcacccactcCACCTCACCCACGCCACCTCACCAGCTACATTACAGCACTCCCACCCCACCTCAGCCAACCCCATATAGCAGTGAGGGTACTATTAGCCATGTAATGCAGGTTGAGACTGTTCCAAGCTAAAGACCACACACCCCATGCTACAGAGGTTACTTAGCTATACAAAATGTTGGAATTGTTCGATAGAAAACAGTCACTGTAGAACTGTAGATATGTCTGTAAACAGCATGGATCACAGTATAACTTGTATTGAAGACATTATTTGACTATGCCCAGTAGAGGGCAGTATTGACTAGTCTCAGATCTGGTGTGTTGTTATCATGTTACTGCAGTTGTAGAATGTTACTGTGTATGAGGAAATACAGTATTTTAGTTATTGAACTGAACACTCAAGTGTATAACTGATCTGGCTGAAAGTATAGCAAATCATAGTTTTATGGGTTTTAAATATTTCATATTCTGATATTATTTTAGACACTGACCAAGTGGATTGGATTTACAATGCAGATTAAAGGGATGGTTGATGGTTGATTTTGGGGCAGATTAAAGGGATGGTTGATGGTTGATTTTGGGGCAAATTAAAGGGATGGTTGATGGTTGATTTTGGGGCAAATTAAAGGGATGGTTAATGGTTGATTTTGGGACAGATTAAAGGGATGGTTGATGGTTGATTTTGGGACAGATTAAAGGGATGGTTGATGGTTGATTTTGGGACAGATTAAAGGGATGGTTGATGGTTGATTTTGGGACAGATTAAAGGGATGGTTCATGGTTGATTTTGGGGCAAATTAAAGGGATGGTTGATGGTTGATTTTGGGGCAAATTAAAGGGATGGTTAATGGTTGATTTTGGGACAGATTAAAGGGATGGTTGATGGTTGATTTTGGGACAGATTAAAGGGATGGTTGATGGTTGATTTTGGGACAGATTAAAGGGATGGTTGATGGTTGATTTTGGGGCAGATTAAAGGGATGGTTCATGGTTGATTTTGGGGCAGATTAAAGGGATGGTTGATGGTTGATTTTGGGGTATTATTAATCTTACCTTGAGTTGTCTATATGGATTAATTATAACTAAAACCAAAAGGAAGCTGTGAGAGAAAGAGTCCAACATAATAATGAAATCAAGCAATGCCTACTGTCTAACAAAATGTCTAACAAGCTGTCTCTGCCTATAATGAGACACAGCTCTTAGTGACATTTCATAACATATTTCAAAGAAGTAGATAAAATATCACTTTTATTTATCTCTATTATTTCTGATTCCATCTAATATCCACATGTTGCTGTTAGAGAAGTTCTGATTGTATCAATCCTGTCTCCAAAAGTTAGTGATTGTGAATGTAGGGTGTGCCTTCAATAAAGACATGTTCATGTTAACTAAACTCTTGTGAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1941659 lncRNA upstream 66240 44057458 ~ 44068769 (+) False G1697232
TU1941660 lncRNA upstream 66240 44057458 ~ 44068769 (+) True G1697232
TU1941663 lncRNA upstream 73670 44060063 ~ 44061339 (+) True G1697234
TU1941557 lncRNA upstream 180538 43943909 ~ 43954471 (+) False G1697166
TU1941715 lncRNA downstream 17892 44199701 ~ 44200676 (+) True G1697277
TU1941721 lncRNA downstream 21357 44203166 ~ 44203645 (+) True G1697280
TU1941730 lncRNA downstream 66765 44248574 ~ 44249840 (+) True G1697288
TU1941732 lncRNA downstream 67310 44249119 ~ 44250342 (+) True G1697289
TU1941734 lncRNA downstream 68903 44250712 ~ 44251165 (+) True G1697291
NM_001124491.1 mRNA upstream 106 44091956 ~ 44134903 (+) True capn2
XM_036955528.1 mRNA upstream 517 44091400 ~ 44134492 (+) False capn2
XM_036955527.1 mRNA upstream 531 44091401 ~ 44134478 (+) False capn2
XR_005037867.1 mRNA upstream 543 44091401 ~ 44134466 (+) False capn2
XM_036956410.1 mRNA upstream 79398 44034494 ~ 44055611 (+) True LOC110499515
XM_036956413.1 mRNA downstream 179 44181988 ~ 44263417 (+) False LOC110499566
XM_036956411.1 mRNA downstream 180 44181989 ~ 44263417 (+) False LOC110499566
XM_036956412.1 mRNA downstream 4132 44185941 ~ 44263417 (+) False LOC110499566
XM_036956414.1 mRNA downstream 38483 44220292 ~ 44263417 (+) True LOC110499566
XM_036956418.1 mRNA downstream 116359 44298168 ~ 44323102 (+) False LOC110499510
TU1941512 other upstream 230151 43867229 ~ 43904858 (+) False G1697152
TU1941520 other upstream 230151 43867229 ~ 43904858 (+) False G1697152
TU1941517 other upstream 234957 43891211 ~ 43900052 (+) False G1697152
TU1941505 other upstream 248259 43867229 ~ 43886750 (+) False G1697152
TU1941142 other upstream 464656 43669564 ~ 43670353 (+) True G1696916
TU1941646 other downstream 49513 44231322 ~ 44231767 (+) True G1697222
TU1941879 other downstream 316851 44498660 ~ 44499846 (+) True G1697374
TU1942524 other downstream 705258 44887067 ~ 44919332 (+) False LOC110499568
TU1942910 other downstream 929757 45111566 ~ 45112361 (+) True G1698119
TU1943288 other downstream 1514387 45696196 ~ 45697330 (+) True G1698413

Expression Profile