RNA id: XM_036956420.1


Basic Information

Item Value
RNA id XM_036956420.1
length 2665
RNA type mRNA
GC content 0.44
exon number 7
gene id LOC110499510
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 44298168 ~ 44327249 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAACTTTTGTGAGGATTGGTCCTTGTGTTTTTATTCAGTTCAATGTTCATATTGCTATCCTTTACAAGTCTACGACGTGAAGAATCAACCACATGACTGTCCCAGAAGGCCCTCAGCAGACATGTTGGGATGAGGCCGTTTAAATAGTTTTAGTGCTGTCTTGTCTCCTTCTGCACTGAAGTGAAGGGGAAAAAACTCCCGAACAAGTAGCATATATTCCCAACGCATTATACTGATGTCCTTTTATCCAGGATTTTCACATCAGTACAGATGAAGGTTCAGGAGAGGAAACTAGTTCATACAAATCACCCCGCGACGGTCACAAGTTCAGGGAGTCGACGGTGGTTTTCTACTTGTTCTGCAGTTGGTGTTTTGTACCGCCAGGCGTTGTTTTGGGAAGGGCGGTTACGACAGAAAACCGGGCGACGTGGAAGCGTGGAGAATGTCATGTACGCGCGTCTCGCTTGTGATCAGGGCTTTTTCCAATAGTTTTTAAAAACGGATTTTCAGTACAGATAAAGGTGTATTTTAAATAGTAGAGAGGATAAAAAAAACAACTGACATTCTTAATATCGTGCATAAATTAAGATCTATAGCCATGGATGAGGCAATAGCGATTCTTTTAATATCCGTTGCGATGTTTTTGGGATGCTTTCTATTAGGTTTGATTCCACTTCTGATGAAACTTTCTGAGAAGAGGCTGCAGTTTGTTAGTGTATTCGGGGCAGGCCTGCTCTGTGGTACAGCTCTAGCTATCGTCCTCCCAGAAGGGGTGGAACTACTGGAAGAGTCATGGAGAGTCTCCTCCTGCTCTGTCGCCCCAgcagcagccaatcagaatgcCAGTGACGTTGGGGTCGGGCAGCAGCTCCAGGAGGAGGACTCCTCCTCTAAAGGTCTCCCAGCACGGTTCTTCATCGGGGTCTCCCTGGTCGTAGGGTTCATCCTCATGTTCCTGGTGGACCAGATCAGTAGCTACTGCTCCAGACACGATCCACGGACTGGGATGTCCAACAGGACCAGTATCACAGCTACACTGGGACTGGTTATCCATGCTGCTGCTGACGGTGTAGCGTTAGGTACAGCCGTGGCTTCCTCCCAGGTCACAGTTCAAGTCGTGGTGTTCCTGGCTGTTATTCTGCACAAGgctcctACAGCGTTTGGTCTGGTCACCTTTCTGATGCAGGCAGGTGTAGAGAAGAAGCAGATTCAGAAGCATCTCTTGGTGTTCTCTGCTGCAGCACCAGTACTCTCCATCAGTACATACTTTATCCTGAACGCGTGTGGTGGTTCGCCCCAGAACCGTCTGAGTGCTACAGGTGTTGGGATGCTCTTCTCCGCCGGGACGTTCCTCTACGTAGCTACGGTCCATGTACTACCAGAGATCAGCTCCAGGGGGCAGCAGAGCTCTCCCCACATCCACGGGACTGGGAGCGGGCAGCTGGAGGTCCTGGAGAGCCTCACGCTGATACTAGGAGCAGGACTACCTGTGTTACTGGCCCTGGGACTACGTGATGACTAGTCTTGTGAATCGACGCTATTGATAGTGAACATTGAGAATTAATGTGAAGGAAGCCTGGAAATCAAGTCTATAACTAAGACCGACTAGTTAACGCAAAGAAGACAACCCACAACATGTTACCAAACATTCATTTACACTGGAGTACACCTCAACTCTTACATAGCTGGAGATCAATTGggggtgtttctgtgtgtgatgCAGTACGTGTCAGTGTCTTTTTCTGAGAGGTCATAAGGACATGGGCTTTGAGCAAGCCAACAAAGGtaggaatagtgtgtgtgtgtgtgtgtgtgtgtgtgtcatgtaaaAGAGTGggatcaaagagagagagggcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgactCTGGTTTATAGAGCTTTTGTAATAGTTTGTCTTATCCGATCTCAGTGGGACATTCTTTTGAGCTAAACTTTTGAAGTTGTCTGAAAAGAACAAGACCATTTTTAGTAAGTGGACCCGTTTTCAAAATAACCCCGGTTTCCTGATGTCCTTTGTACCTCTActgaacaaacaaaacatttgtttatttatttaggtTAGCTAAAAAAAAAAGTCCCCAAAACCAGATTTGAATCAAATGGATAACATTTCGTCTTTTGTAATTTCTGAGAAATGTTTTGGCtgggttgtgtaaggtactgagGTATTCAGGGAAGGTTGtgaaaaactaaaaaaaaaaaaaacactttatcaGAATTTAAATGGTTGTCATAACGACGTGGCCTAAATAAACCACAATATAGTGATGATTTATTGATTTTATATTGGATGTGATCAAGATATGTCTTTATAGACAAGGAGAGATCTTAAATACATTTCTACATGGTGTACTATAGCCAGGACAATGTTGTCTGGTTACCAGTCTGTTTAGATATCGTAACACTTCCTGGCAATCTGTGTCAAATGCTAAACATCTTTATAACACAGAGTACCCTAAGTGGAATATTATCCAAACAGATTGGTCCCCAGGCTAAGGACAATAGGCTGTATTTTTAATGAATACTTTATCATAACAATCAtagatttaaaaacaaaaaatgtttttttaaagtacatGACTTGTAAATTGCTGATTAATAAAGTTAGATTGTATTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1941743 lncRNA upstream 1034 44297005 ~ 44297437 (+) True G1697298
TU1941740 lncRNA upstream 40008 44257950 ~ 44258463 (+) True G1697295
TU1941734 lncRNA upstream 47306 44250712 ~ 44251165 (+) True G1697291
TU1941732 lncRNA upstream 48129 44249119 ~ 44250342 (+) True G1697289
TU1941730 lncRNA upstream 48631 44248574 ~ 44249840 (+) True G1697288
TU1941752 lncRNA downstream 26403 44353652 ~ 44364604 (+) True G1697303
TU1941776 lncRNA downstream 31521 44358770 ~ 44359412 (+) True G1697323
TU1941778 lncRNA downstream 32342 44359591 ~ 44360649 (+) False G1697324
TU1941779 lncRNA downstream 32342 44359591 ~ 44361677 (+) False G1697324
TU1941780 lncRNA downstream 34166 44361415 ~ 44361677 (+) True G1697324
XM_036956413.1 mRNA upstream 35054 44181988 ~ 44263417 (+) False LOC110499566
XM_036956411.1 mRNA upstream 35054 44181989 ~ 44263417 (+) False LOC110499566
XM_036956412.1 mRNA upstream 35054 44185941 ~ 44263417 (+) False LOC110499566
XM_036956414.1 mRNA upstream 35054 44220292 ~ 44263417 (+) True LOC110499566
XM_036956417.1 mRNA upstream 116662 44137897 ~ 44181809 (+) True LOC110499567
XM_021576642.2 mRNA downstream 10396 44337645 ~ 44361974 (+) False LOC110499511
XM_021576643.2 mRNA downstream 10423 44337672 ~ 44361974 (+) False LOC110499511
XM_036956421.1 mRNA downstream 13234 44340483 ~ 44361974 (+) True LOC110499511
XM_036956435.1 mRNA downstream 74774 44402023 ~ 44502063 (+) False LOC110499508
XM_036956434.1 mRNA downstream 74777 44402026 ~ 44528493 (+) False LOC110499508
TU1941646 other upstream 66704 44231322 ~ 44231767 (+) True G1697222
TU1941512 other upstream 393613 43867229 ~ 43904858 (+) False G1697152
TU1941520 other upstream 393613 43867229 ~ 43904858 (+) False G1697152
TU1941517 other upstream 398419 43891211 ~ 43900052 (+) False G1697152
TU1941505 other upstream 411721 43867229 ~ 43886750 (+) False G1697152
TU1941879 other downstream 171411 44498660 ~ 44499846 (+) True G1697374
TU1942524 other downstream 559818 44887067 ~ 44919332 (+) False LOC110499568
TU1942910 other downstream 784317 45111566 ~ 45112361 (+) True G1698119
TU1943288 other downstream 1368947 45696196 ~ 45697330 (+) True G1698413
TU1943289 other downstream 1372841 45700090 ~ 45701101 (+) True G1698414

Expression Profile