RNA id: XM_021576643.2


Basic Information

Item Value
RNA id XM_021576643.2
length 1482
RNA type mRNA
GC content 0.53
exon number 12
gene id LOC110499511
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 44337645 ~ 44361974 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCATTATTGTGTCAAGCTTCACAGTGGTTTCTTCACCTAATACGTTCGTTTCTGTCAGAAAAGCGGTTCGCTTTGAGGACTGTCAACAAGGCTCTCCTgaATCTCCTTGCGAATGATTTTGCCGAAGATTGTATCACCCCCGGGCTGGGCAACCTGAGCTTTTGCTGAGCTTTTGCAGCTTTGAAGAGGGGTGATAGCCAAAACCTaaaagaatagaggagagaggaatacCAAACAACTGCATACAATACCAAAACCCCCCATCCAAGATGAGGCGAACCAGCCGCGGAGGGGGCGAGACCGCTCCTCCCCGTCAGAACGGTGTGCCCGGGGGTAAAGGGGACGGCAGGGCAGCGGAGCGTGGGGATGCAGCAGCCGGCGGTGATGATGATGAGGCCGGGTGCAGCCCAGCAGACATGCAGGATGAGGACAATGATCCGGCGCGGAGGAGAGAGATCAGGAGCAAGTACAGGGACCTCATCAACTCTGTTCAACAGAACAGAGAGGACATGTTGAGTCCCACCAACAACAAACTGACAGACGTGTTGGAGGAGGCTAACAAACTGTTTGCAGAAGTCCGTCAGGCCCGCGAAGCAGCTCTCGACGCTCAGCTCCTGGTGCTGGCTACAGACCTGGGGAAGGAGAAGGCCAGCCAGCTACACGCTGAGGGATCAGCCTTCGATCCCTCAGCCTTCGCCGAACACCTGTTGTCGTTCATGGGTTTGAATCGCctggaggatgaagatgaggaggaggagggtggtggtgcGAGCGGTGGCTACCTCCCCCAGGACGCGTGGCAGAGGGTGGCTAATAGAGCTCAACGCTGCTTCAGGACTGCTCCCTCCTTCCACTACATGATGGGATCGTTCCTGGCTGAGTTGCCTCCGCCTCGccagagggtagagagacagaggaaagttCCCGGGAGGGAGGCCAAGAGGATCATGCCCACTCAGttgaggaggatggaggagtctCACCAGGAAGCTacagagaaggaggtagagaggattcTGGGATACCTGCAGGACTACTTCAATGAGGACCCCACATCTCCCATCTCCTACTATGAGTTTGTCATAGACCCCACCTCCTTCTCCCGCTCTGTGGAGAACATCTTCCACACCTCCTTCCTGGTCAGGGATGGTGTGGCGAGGATGTACCTGGACCACGATAAACTTCCTTGTATCGctcCTGTAGAAGAAGGGGAGGTGGAGGCTGGTGGAACATCCAGCAGACAGCAGTGTGTCATCTCTATCAGCCCCAAGAGTtggaaggaGATAATTGAGGTCTTTAGTATCAGCGAGCCTCTGATCCACCCTcccagcacacagcacacagaatGATACGGCTCCTTTTTTAAAACATCATCATCTTATCGACTTGAACTCTAACTGTAAATATTTGTTTTCTATAAATAGTTGTTGTTCACAGTTTTTAAATTCATGACATTTATTTGATTAAAAAGAGAGAACCGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1941761 lncRNA upstream 17073 44319152 ~ 44320599 (+) True G1697310
TU1941762 lncRNA upstream 17510 44319777 ~ 44320162 (+) True G1697311
TU1941743 lncRNA upstream 40235 44297005 ~ 44297437 (+) True G1697298
TU1941740 lncRNA upstream 79209 44257950 ~ 44258463 (+) True G1697295
TU1941734 lncRNA upstream 86507 44250712 ~ 44251165 (+) True G1697291
TU1941782 lncRNA downstream 990 44362964 ~ 44363777 (+) True G1697325
TU1941785 lncRNA downstream 10137 44372111 ~ 44372668 (+) True G1697327
TU1941824 lncRNA downstream 31897 44393871 ~ 44395419 (+) True G1697341
TU1941816 lncRNA downstream 45521 44407495 ~ 44408262 (+) True G1697335
TU1941845 lncRNA downstream 76534 44438508 ~ 44441645 (+) False G1697353
XM_036956420.1 mRNA upstream 10423 44298471 ~ 44327249 (+) True LOC110499510
XM_036956418.1 mRNA upstream 14570 44298168 ~ 44323102 (+) False LOC110499510
XM_036956419.1 mRNA upstream 14571 44298170 ~ 44323101 (+) False LOC110499510
XM_036956412.1 mRNA upstream 74255 44185941 ~ 44263417 (+) False LOC110499566
XM_036956435.1 mRNA downstream 40049 44402023 ~ 44502063 (+) False LOC110499508
XM_036956434.1 mRNA downstream 40052 44402026 ~ 44528493 (+) False LOC110499508
XM_036956422.1 mRNA downstream 40068 44402042 ~ 44537701 (+) False LOC110499508
XM_036956423.1 mRNA downstream 40068 44402042 ~ 44537701 (+) False LOC110499508
XM_036956424.1 mRNA downstream 40068 44402042 ~ 44537701 (+) False LOC110499508
TU1941646 other upstream 105905 44231322 ~ 44231767 (+) True G1697222
TU1941512 other upstream 432814 43867229 ~ 43904858 (+) False G1697152
TU1941520 other upstream 432814 43867229 ~ 43904858 (+) False G1697152
TU1941517 other upstream 437620 43891211 ~ 43900052 (+) False G1697152
TU1941505 other upstream 450922 43867229 ~ 43886750 (+) False G1697152
TU1941879 other downstream 136686 44498660 ~ 44499846 (+) True G1697374
TU1942524 other downstream 525093 44887067 ~ 44919332 (+) False LOC110499568
TU1942910 other downstream 749592 45111566 ~ 45112361 (+) True G1698119
TU1943288 other downstream 1334222 45696196 ~ 45697330 (+) True G1698413
TU1943289 other downstream 1338116 45700090 ~ 45701101 (+) True G1698414

Expression Profile