RNA id: XM_036956437.1


Basic Information

Item Value
RNA id XM_036956437.1
length 5661
RNA type mRNA
GC content 0.48
exon number 6
gene id LOC110499568
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 44885773 ~ 44922697 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCGGGTTAgataaaatacaatatatatacgTTCGACGTCAATTTGACATGACCCGTATCGGGCGctgaagggagagaaagggggagggggagctgACAGCAAACCAGCAGAGGGGCGTATTAAAAATCACTGGCAGCGCGCTGCGACAGAAAACAGCCTGTATAGCATGCCCATAGGAGTGTGGATTGACTGCGGTTTGGTTTACACCATTTGGACACGGTGAGGAACGGGACGCACTTGGAGCTTGGATTGGATAGCTGCTGGTTTTATGCTGCGCAGAACTCAGCCCAGAATTACCACCACCACGCCTATATTCGCCACTAATGGACGGATAATGTTCGTGGTTGAAAAGGACAACTATTCAAACTAGAAATTATTATTTTGGGGGGGATCCACTTCTTGGCGATTGGATGGTGTGCGAAAGGTAGCCACACCAGCAAGTTCACTCTCTACGCAAATTCAAAATGACACTTTTTGGATAGAGGATAGCCTATGTAATGCATAAGGGATCATTTGTGTCCAAAGCATCAAAACCAAGGAGTGCTGCATACCAcagatgagagagaaggggaacgaGGTTTGATTCTGAAGCTGAGCCAAAGTATTCGTGTAAACAGTGGAGAATGCAGTGGGGGGAAACACGGGCCTGGAACTGGGCTGCACGTTTCTTGATCGTGGAGAGGACTGCACCTGGAGTGCAACAAGCAATAGCCTACATTTCTATAACATGCTAAATTTTGCGCAAGAAAATTGTCCCGCTGTTATTTAAATACTTTTCTCATGGGTAGTGTTATTCAGTCGCCCTGGCAGCATTTGGATAATTAACTTTGGAGATCCATGCCAACATAGAAGCAGCATAGTTCAAGGGGATACCCCAGGGAACCTTGCTGAATGGACCTTTAACTTTGGTTTAACGTTATCCTTTTTACACAGCGAATCCGGACTCACTTTTTGGCACATTTGAAGAACGCTCTCCACCGAGGCTGGTCTGATGTAATTAAAAGTAAACTAAATCAACCTAACCTGATCCCAAACACAAACTTTAGacagattttattttattacgTCCTACCCCCCTTTCCCATTAAAAGTGTACTTCTGAACCTCGAAGTGGCTCCGAAGTGGTGTTGTGACTCCTCGCCCGCAGCGGATCCGGAGCTTGGAGTGTCTGGAGCGGGAGGAGTTGGCGGCGGACCCCCTGTCACACCGCAGGGACCCAAGACGGGTCGGGTGAAAAAGATGGTTCGATTTGCGGCAGAACTGTTGTTGCTTTTAGGACTTCTACTTCTTACCTTACATATTACGGTGTTAAGGAGCAGCCCGCTGAATCAAGGGAATTTAACTTTGAGCCAGGATCAGCAGTATACAGTGATTGCAGAGAATGTCAGAACAGAGAGCAGTTTGTTAGCCCAGCAGGGTCCAGGGAAGCGGAGAGGATCAGAGCCCCAGTCAGCCCAGAGGCCTGCTGTCCTCCCCTGGGCTCCGAGTCAGGCTACCGGAGGCAGCCTGCAGAGAGACAGGCCTGGGGCCTTCCTCCTGGACTTCAGCAACTTCCCTGACCTCTCCAAGGCTGATATAAACAGACAGAACCCCAACATACAGgtGACCATAGAGGTGGTGGACGATCTAGACGGGGCGGAGCATGAGAAAGGCCTGAAGAAGGAGAACAAACCAGGTTTGGCCGCTCCCAACTGGAGAAACTGGTGGCAAAccacctcctcttcatcctcctcctcttcttcttcagtCTTGACCCCACGTCAACCCAAGGAGCAGGCTAGGGAGCAGCAGCCCACCtacagaggaggagtagcaagTGGCAGTAACACAGAGGATAGTAACTTCCTAAAACCACTAGggggctgggagaggagaggaggcgcaGGAGGAGGACGTGCCAGCAAGGTTCAGGCTGAATATGacTATATAGATGGAGACGGTGGCTGGAGTAACTGGTCTCCATGCAGTGTAACCTGTGGGAACGGGAACCAGAAGAGGATCAGGTCATGTGGTTACGCCTGTAGCGCCACAGAGTCACGCACCTGTGACATGTCACCCTGcccagGTATTGAAGATGCGTTCAAGACAGCCGCCACTGAGGTCAGTCTACTGGCTGGAACAGATGAGTTCAACGCTACAGAGCTCTTTGGTGTCGACACAGACAGCTGTGAACGCTGGATGAACTGTAAGTCTGAGTTCCTGAAGAAATACATGACCAAGGTCTCCAACGACCTCCCCAGCTGCCCCTGCTCCTACCCCACCGAGGTGGCCTACAGCACGGCCGACGTCCCCGACCCCGCCACACTCCGGGACTTCCGCTGGAAAGACGCCAGCGGCCCCAAGGAGAAACTAGAGATCTACAAACCCACGGCCCGGTGCTGCATCCGCTCCATGTTAACTCTAGAGTCCACTACTCTGGCTGCACAGCACTGCTGCTACAATGACAACATGAAGCTCATCACCCGGGGTAAAGGAGCAGGAACACCCAACCTCATCAGCAACGAGTTCTCTGCTGACCTCCACTACAAGGTAGACGTCCTGCCCTGGATCATCTGTAAGGGGGACTGGAGTCGCTATAACCAGGTCAGGCCTCCTAACAACGGGCAGAAGTGCCCAGACAACCCCCTGGATGAGAATTACCTCAAACAAGTTGAGGAGGCATGGGAGTTTTAGAACTGGAGAGATGAACATATTAAGGGAAAAAACATATGAAATATTTGTATGAAACTTGTACCTCAATTGCTGCTTCAAACCATCCAAGGCTAGAGTCCAAATGAACAGGACTGTTTGTTGATATCAGCCAACGTGATAAAAGAGACAACGTATTGCTCACATGGACACATCATTGTCCTCAACAGAGACTATGGACTCTATTTTAATAAAACCTAACTCAATGGTAAATCTAACCACTGGCACTAGGGCTACAGGTTCGGGGGCgtgtcagaaatatttttggCTATTTTCATAACCAGAATTATTGTCTCAGTAACAGGCGGTGGTGCataagggctgggttttgatagCAGGCGGTGGTGCataagggctgggttttgatagCAGGCGGTGGTGCataagggctgggttttgatggcAGGCGGTGGTGCataagggctgggttttgatagCAGGCGGTGGTGCATAAGGGCTGGGTATTGATAGCAGGAGGTGGTGCATAAGGGATGGGTATTGATAGCAGGAGGTGGTGCATAAGGGCTGGGTATTGATAGCAGGCGGTGGTGCataagggctgggttttgatagCAGGCGGTGGTGCataagggctgggttttgatagCAGGCGGTGGTGCataagggctgggttttgatagCAGGCGGTGGTGCataagggctgggttttgatagCAGGCGGTGGTGCATAAGGCCTGGGTTTTGATGGCAGGCGGTGGTGCATAAGGCCTGGGTTTTGATGGCAGGCGGTGGTGCATAAGGCCTGGGTTTTGATGGCAGGCGGTGGTGCATAAGGCCTGGGTTTTGATGGCAGGCGGTGGTGCATAAGGCCTGGGTTTTGATGGCAGGCGGTGGTGCataagggctgggttttgatagCAGGCGGTGGTGCATAAGGCCTGGGTTTTGACGGCAGGCGGTGGTGCataagggctgggttttgatagCAGGCGGTGGTGCataagggctgggttttgatgaataaacaagttgaTGCTACAGAATGTCGAAGGCTTGTtgacccctcactggccaatcagaatgggCTCCATGGCTAAATGATGTGGTTTCTTCAAGCTGTGTATTTATGGTATTTTATGTATTGTGTTGTCATCAACTCCTATgttagtccgtaatagtttgttAAAGAGCCtacagaaacaaaataacaacatgtAGACCTATCCTATATTTACTAAACATAGTACATTTGTAGTACATGTTTTTGAACAGTAATTGCTACAATATGCAAATATATTGTTaacatagcattcacactgatatacagagaatgtatgtgaaccctttgaatgacctggatttctgcataaattggtcataaattggatcttcatctaggtcacaacaagacaaacacagtctgcttaaactaataacacacaaacaattctaCGTTTTCATTTTATTAATCACACCGTGTAAACATCCACAGTGGAGGGTGGGAAAAACGTATGAGACCCTTTGTATTtcataactggttgaccctccttcggcagcaataacctcaaccaaacattttctgtagttgcggatcagaccaaaacggtcaggaggaattttggaccattcctctttactcTTAACAACCTCATTACCATCAGCCAAACACAGTATCATAACACAGTCTCCTTACCATCAGCCAAACACAGTATCATCCCAACGCAGCCTCCTTACCATCAGCCAAACACAGTATCATAACACAGCCTCCTTACCATCAGCCAAACACAGTATCATCACAACACAGCCTCCTTACCATCAGCCAAACACAGTATCATAACACAGCCTCCTTACCATCAGCCAAACACAGTATCATCACAACACGGCCTCCTTACCATCAGCCAAACACAGTATCATAACACAGCCTCCTTACCATCAGCCAAACACAGTATCATAACACAGCCTCCTTACCATCAGCCAAACACAGTCTCCTTACCATCAGCCAAACACAGTCTCCTTACATCAGCCAAACACAGTCTCCTTACCATCAGCCAAACACAGTATAATAACAGTCTCTTTACCATCAGCCAAACACAGTATCATCACAACACAGCCTCCTTACCATCAGCCAAACACAGTATCATAACACAGTCTCCTTACCATCAGCCAAACACAGTTTCATCACAACACAGCCTCATTACCATCAGCCAAACACAGTATCATAACAGTCTCCTTACCATCAGCCAAACACAGTATCATAACAGTCTCCTTACCATCAGCCAAACACAGTATCATAAGTCTCCTTACCATCAGCCAAGCACAGAGCCTTCATTTGTATGATATATGCCTCTGTAATGATCAATGTAATGATTAAAAGTAAAACTGTATAATGCATTTTTGCCAATATTCTGTCTGATAATTCTTTAAGTTTCGGGGTTAAAAAGGACAGCTTGATGTAGATTCAGAAAAAAAtggttttatgttattttaatttgTTTCTGATTGAGAACTTGTGTATCTCCATTGCCCAATTGGACACTATGTTTTGAGTGACACCCACCCTGACCCATCAGAAGCTATAGAGAGACACCCCTGACCTATCAGAATCGGAAAGGGTCTCTGTGCTGTGGATAACACAGTTATCCCATTGGAGCTGAGTGCATAGGGGAGGAGCAACATcagaacccagaaccaaatcTTGTGTGTTAGCTATGACATGCATGTTAAGTCTGTCAAGAGTGAATTATCATGACCACGGCTCCCATCCAGAACCTGTGGCGGAATGGGTCACCATTCTGCTAGTTTCCCACTGCCAGACATAACACACAGACTGGCTGTGGTCAGGGCTAGctttctaccatcctctcctaaAGGTGACTTGGGCAGATATATGATATTCCGGTTCCCATATGTGATTATACACTTGTTTATTTAGAATGCActtgtttatttttgttgttgttgacgaaCCCGatctgccctccactctgccctccactctgccctatggatctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1942513 lncRNA upstream 1473 44875368 ~ 44884300 (+) False G1697820
TU1942511 lncRNA upstream 1473 44880996 ~ 44884300 (+) True G1697820
TU1942501 lncRNA upstream 4865 44842712 ~ 44880908 (+) False G1697819
TU1942502 lncRNA upstream 5930 44841319 ~ 44879843 (+) False G1697819
TU1942504 lncRNA upstream 5930 44844401 ~ 44879843 (+) False G1697819
TU1942666 lncRNA downstream 4748 44927445 ~ 44927695 (+) True G1697925
TU1942667 lncRNA downstream 5991 44928688 ~ 44929168 (+) False G1697926
TU1942670 lncRNA downstream 6198 44928895 ~ 44929168 (+) True G1697926
TU1942674 lncRNA downstream 6745 44929442 ~ 44929647 (+) True G1697928
TU1942675 lncRNA downstream 9841 44932538 ~ 44933568 (+) False G1697929
XR_005038028.1 mRNA upstream 348055 44402042 ~ 44537718 (+) False LOC110499508
XM_036956422.1 mRNA upstream 348072 44402042 ~ 44537701 (+) False LOC110499508
XM_036956423.1 mRNA upstream 348072 44402042 ~ 44537701 (+) False LOC110499508
XM_036956424.1 mRNA upstream 348072 44402042 ~ 44537701 (+) False LOC110499508
XM_036956425.1 mRNA upstream 348072 44402042 ~ 44537701 (+) False LOC110499508
XM_036956440.1 mRNA downstream 402204 45324901 ~ 45440892 (+) False LOC110515455
XM_036956438.1 mRNA downstream 402205 45324902 ~ 45444013 (+) False LOC110515455
XM_036956439.1 mRNA downstream 402205 45324902 ~ 45444013 (+) True LOC110515455
XM_036955573.1 mRNA downstream 756228 45678925 ~ 45679902 (+) True LOC118942022
XR_005038029.1 mRNA downstream 1100197 46022894 ~ 46025800 (+) True LOC118942078
TU1941879 other upstream 385927 44498660 ~ 44499846 (+) True G1697374
TU1941646 other upstream 654006 44231322 ~ 44231767 (+) True G1697222
TU1941512 other upstream 980915 43867229 ~ 43904858 (+) False G1697152
TU1941520 other upstream 980915 43867229 ~ 43904858 (+) False G1697152
TU1941517 other upstream 985721 43891211 ~ 43900052 (+) False G1697152
TU1942910 other downstream 188869 45111566 ~ 45112361 (+) True G1698119
TU1943288 other downstream 773499 45696196 ~ 45697330 (+) True G1698413
TU1943289 other downstream 777393 45700090 ~ 45701101 (+) True G1698414
TU1943852 other downstream 1266248 46188945 ~ 46190421 (+) True G1698884
TU1944007 other downstream 1624075 46546772 ~ 46552961 (+) True LOC110499521

Expression Profile