RNA id: TU1942664


Basic Information

Item Value
RNA id TU1942664
length 227
lncRNA type sense_over
GC content 0.47
exon number 1
gene id LOC110499568
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 44885773 ~ 44922697 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTATCTCCATTGCCCAATTGGACACTATGTTTTGAGTGACACCCACCCTGACCCATCAGAAGCTATAGAGAGACACCCCTGACCTATCAGAATCGGAAAGGGTCTCTGTGCTGTGGATAACACAGTTATCCCATTGGAGCTGAGTGCATAGGGGAGGAGCAACATcagaacccagaaccaaatcTTGTGTGTTAGCTATGACATGCATGTTAAGTCTGTCAAGAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1942533 lncRNA upstream 27638 44893264 ~ 44894559 (+) True G1697838
TU1942513 lncRNA upstream 37897 44875368 ~ 44884300 (+) False G1697820
TU1942511 lncRNA upstream 37897 44880996 ~ 44884300 (+) True G1697820
TU1942514 lncRNA upstream 56926 44862197 ~ 44865271 (+) True G1697821
TU1942508 lncRNA upstream 58321 44859978 ~ 44863876 (+) True G1697819
TU1942666 lncRNA downstream 5022 44927445 ~ 44927695 (+) True G1697925
TU1942667 lncRNA downstream 6265 44928688 ~ 44929168 (+) False G1697926
TU1942670 lncRNA downstream 6472 44928895 ~ 44929168 (+) True G1697926
TU1942674 lncRNA downstream 7019 44929442 ~ 44929647 (+) True G1697928
TU1942675 lncRNA downstream 10115 44932538 ~ 44933568 (+) False G1697929
XR_005038028.1 mRNA upstream 384479 44402042 ~ 44537718 (+) False LOC110499508
XM_036956426.1 mRNA upstream 384496 44402042 ~ 44537701 (+) False LOC110499508
XM_036956440.1 mRNA downstream 402478 45324901 ~ 45440892 (+) False LOC110515455
XM_036956438.1 mRNA downstream 402479 45324902 ~ 45444013 (+) False LOC110515455
XM_036956439.1 mRNA downstream 402479 45324902 ~ 45444013 (+) True LOC110515455
XM_036955573.1 mRNA downstream 756502 45678925 ~ 45679902 (+) True LOC118942022
XR_005038029.1 mRNA downstream 1100471 46022894 ~ 46025800 (+) True LOC118942078
TU1942524 other upstream 2865 44887067 ~ 44919332 (+) False LOC110499568
TU1941879 other upstream 422351 44498660 ~ 44499846 (+) True G1697374
TU1941646 other upstream 690430 44231322 ~ 44231767 (+) True G1697222
TU1941512 other upstream 1017339 43867229 ~ 43904858 (+) False G1697152
TU1942910 other downstream 189143 45111566 ~ 45112361 (+) True G1698119
TU1943288 other downstream 773773 45696196 ~ 45697330 (+) True G1698413
TU1943289 other downstream 777667 45700090 ~ 45701101 (+) True G1698414
TU1943852 other downstream 1266522 46188945 ~ 46190421 (+) True G1698884
TU1944007 other downstream 1624349 46546772 ~ 46552961 (+) True LOC110499521

Expression Profile