RNA id: TCONS_00050127


Basic Information

Item Value
RNA id TCONS_00050127
length 2061
RNA type mRNA
GC content 0.36
exon number 4
gene id XLOC_025408
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 28953274 ~ 28961518 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCCGGTGTGCTTATACAGAATATGTCCTTCAAAGTTGGACAGACTCTGACTATAACAGGAGTTCCAAAGCCTGATTCCACAAATTTTGCTATTAACATTGGTCACAGCCCTGAAGACATCGCTCTCCACATGAATCCCCGATTTGATGCCCATGGGGACCAGTGCACTATAGTGTGCAATTCATTCCAGAGCGGCAGCTGGTGTGAGGAGCACAGAGACAACAACTTTCCATTTATTCAGGACAAGGAGTTTCAGATAAAAATCACATTCACCAATGAAGAATTTCTGGTGACTCTTCCTGATGGTTCTGAAATCCACTTCCCGAACCGTCAAGGCTCAGAGAAGTATAAGTATATGCATTTCGAAGGCGAAGTCAGGATCCAAGGGGTTGAAATTAAATAGACTAATAATAAGTGGCTCACAGTTATAATCTGATGTAGTTTGGATTATTCTGCGCATTTTGTTACTATGCAGCTCTTTTATCCACAATTTTCAGTAAATTTGGAGCATCTCAATCACATTCGTATGCCAAATCAGCATTTTAATTTTGCTGTGGCACTGCCTGTCTAAACCACTAGAGGGAGCGCAACTACAGCAAATTGTCATGAGCTTTAGCGGTACATGCTAACCATTGTCTAGAGTTTGACTGTTTTACTAATAGTTTATTTTTCCGACTATTTTTCTGTAATACGACATCATGGTCTTAATTATGTTTTGTAACTAAAGCAAATTAACAAACTACAGCTGTTGGCAGATGAAAATAAATCCTGTTTTCACAAATAAACTGAGTCTGtttttaagtttagttgtgcttcATATTCAAGGTCAAGGATTGACACAAACTGAGTAAGAACTTTTACAATGAAACAAAACCTTTAATTCTGTCAGGTGCTTGATATAAGTATATGTCAGGAATTTGAAGTCCCACTgccagtttattttaaatatgtcattcatgacatgaatgaaatattcagTTCATGAGAGACTAAACAGCACAATTCAAAGGTATGTTGATGTATGCATTTTCTCTGTGGTTGATAACAACAAAGCATAAATATATGTTAATGCAACAAAGTTGTAGGGGAGAACGGGACGAAAGTAGGTTACCATTTTCCATAAAAACCTATTTTTAAAAGATCATGCTTTggacagaaatatattttttgctgtggttactaactcaTAAGTGCTGTCTATCAACACCAGGTGGTATTTTGAACAAATGTTGAACAGCTTCATAATAATTtcacattaaacataaattgccCATATATTGACTCTGTCAGTAACACATGGATGGGTCAAAAGTAACACAACATTATTTGCTAGATTTACAGACTCAATCttgtttatttcaaatatatctgACTGTGATCTTGTTAATGttcactgcaaacatattttgtccttttattaaaaaaaaatgcatttttatgtttAAGGGCATCACGGTAGcatagtgggtagcatgattgcctcacagcaagaaagtctggTCCAAACCTTGGCTGGTTCAGAAggcagtgtggagtttgcatgctcttcccgtgttcacgtgggttgaatttggtaagctaaattggccgtagtgtatgtgtgtgatggattgcagatgaaagggcatttgctgtgtaaaatatgctgaataagttggcggttcattctgctgtggtgaccacggattaataaagggattaagccgaaaagaaaatgaatgaatgaattttcatttttaattttagttccATCTAGGCATGGGCCAGTGTATAGgtatatgataaccttggataaaaatatcatattttcaCAGTAAgctatcatggtattgtgattactgctctaaaataagttatttttaaatgtctgggtaaaaatgcAACACATTTTCCTTCATtgaacataatatatatttttttaagaaacatttaaaatattttgtaacagtaaacccGTCAGGCTgcataattcaaataaatgattgacttctgctctcttcgttactttttaaaacacagatttctttaaagcactaaaaaaacacacacaaaacacaca

Function

GO:

id name namespace
GO:0048741 skeletal muscle fiber development biological_process
GO:0090303 positive regulation of wound healing biological_process
GO:0002040 sprouting angiogenesis biological_process
GO:0050769 positive regulation of neurogenesis biological_process
GO:0001944 vasculature development biological_process
GO:0005615 extracellular space cellular_component
GO:0030246 carbohydrate binding molecular_function
GO:0016936 galactoside binding molecular_function
GO:0043236 laminin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050318-2 Enables galactoside binding activity and laminin binding activity. Acts upstream of or within several processes, including positive regulation of neurogenesis; skeletal muscle fiber development; and sprouting angiogenesis. Predicted to be active in extracellular space. Is expressed in digestive system; musculature system; nervous system; notochord; and spleen. Human ortholog(s) of this gene implicated in myocardial infarction. Orthologous to human LGALS2 (galectin 2).

Ensembl:

ensembl_id ENSDART00000103602

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052345 lncRNA upstream 27282 28899129 ~ 28926075 (+) True XLOC_025406
TCONS_00050122 lncRNA upstream 110181 28842122 ~ 28843176 (+) True XLOC_025404
TCONS_00052694 lncRNA upstream 169600 28765693 ~ 28783757 (+) True XLOC_025403
TCONS_00052693 lncRNA upstream 219592 28699134 ~ 28733765 (+) False XLOC_025402
TCONS_00052695 lncRNA downstream 431947 29393465 ~ 29398151 (+) True XLOC_025411
TCONS_00050132 lncRNA downstream 444495 29406013 ~ 29409959 (+) True XLOC_025412
TCONS_00052696 lncRNA downstream 678466 29639984 ~ 29640294 (+) True XLOC_025417
TCONS_00050149 lncRNA downstream 702839 29664357 ~ 29671653 (+) False XLOC_025419
TCONS_00052697 lncRNA downstream 707555 29669073 ~ 29669897 (+) True XLOC_025419
TCONS_00050125 mRNA upstream 6601 28939759 ~ 28946756 (+) True XLOC_025407
TCONS_00050123 mRNA upstream 83717 28860283 ~ 28869640 (+) False XLOC_025405
TCONS_00050121 mRNA upstream 99422 28831622 ~ 28853935 (+) False XLOC_025404
TCONS_00050118 mRNA upstream 102538 28831450 ~ 28850819 (+) False XLOC_025404
TCONS_00050128 mRNA downstream 120749 29082267 ~ 29378430 (+) False XLOC_025409
TCONS_00050131 mRNA downstream 217811 29179329 ~ 29377750 (+) False XLOC_025409
TCONS_00050130 mRNA downstream 217811 29179329 ~ 29377750 (+) True XLOC_025409
TCONS_00050133 mRNA downstream 483955 29445473 ~ 29468859 (+) False XLOC_025413
TCONS_00050134 mRNA downstream 496999 29458517 ~ 29468031 (+) True XLOC_025413
TCONS_00050124 other upstream 87275 28861176 ~ 28866082 (+) True XLOC_025405
TCONS_00050119 other upstream 102923 28831518 ~ 28850434 (+) False XLOC_025404
TCONS_00050090 other upstream 1546146 27407096 ~ 27407211 (+) True XLOC_025392
TCONS_00050085 other upstream 1879225 27071773 ~ 27074132 (+) True XLOC_025389
TCONS_00050071 other upstream 2634303 26310494 ~ 26319054 (+) True XLOC_025378
TCONS_00050129 other downstream 205502 29167020 ~ 29167147 (+) True XLOC_025410
TCONS_00050143 other downstream 679476 29640994 ~ 29654697 (+) False XLOC_025418
TCONS_00050146 other downstream 680682 29642200 ~ 29654921 (+) False XLOC_025418
TCONS_00050147 other downstream 686604 29648122 ~ 29649158 (+) False XLOC_025418
TCONS_00050148 other downstream 692642 29654160 ~ 29654925 (+) True XLOC_025418

Expression Profile

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