Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00050130 |
| length | 7010 |
| RNA type | mRNA |
| GC content | 0.50 |
| exon number | 34 |
| gene id | XLOC_025409 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007114.7 |
| NCBI id | CM002887.2 |
| chromosome length | 62628489 |
| location | 29082267 ~ 29378430 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0019228 | neuronal action potential | biological_process |
| GO:0070509 | calcium ion import | biological_process |
| GO:0070588 | calcium ion transmembrane transport | biological_process |
| GO:0055085 | transmembrane transport | biological_process |
| GO:0086010 | membrane depolarization during action potential | biological_process |
| GO:0006811 | ion transport | biological_process |
| GO:0030317 | flagellated sperm motility | biological_process |
| GO:0045956 | positive regulation of calcium ion-dependent exocytosis | biological_process |
| GO:0043005 | neuron projection | cellular_component |
| GO:0001518 | voltage-gated sodium channel complex | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0005891 | voltage-gated calcium channel complex | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005216 | ion channel activity | molecular_function |
| GO:0005245 | voltage-gated calcium channel activity | molecular_function |
| GO:0005248 | voltage-gated sodium channel activity | molecular_function |
| GO:0005261 | cation channel activity | molecular_function |
| GO:0008332 | low voltage-gated calcium channel activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-060503-324 | Predicted to enable low voltage-gated calcium channel activity and voltage-gated sodium channel activity. Predicted to be involved in several processes, including calcium ion import; neuronal action potential; and positive regulation of calcium ion-dependent exocytosis. Predicted to act upstream of or within calcium ion transmembrane transport and flagellated sperm motility. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated sodium channel complex. Predicted to be active in neuron projection. Is expressed in atrium and cardiac ventricle. Human ortholog(s) of this gene implicated in schizophrenia. Orthologous to human CACNA1I (calcium voltage-gated channel subunit alpha1 I). |
| ensembl_id | ENSDART00000085216 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00052345 | lncRNA | upstream | 253254 | 28899129 ~ 28926075 (+) | True | XLOC_025406 |
| TCONS_00050122 | lncRNA | upstream | 336153 | 28842122 ~ 28843176 (+) | True | XLOC_025404 |
| TCONS_00052694 | lncRNA | upstream | 395572 | 28765693 ~ 28783757 (+) | True | XLOC_025403 |
| TCONS_00052693 | lncRNA | upstream | 445564 | 28699134 ~ 28733765 (+) | False | XLOC_025402 |
| TCONS_00052695 | lncRNA | downstream | 15715 | 29393465 ~ 29398151 (+) | True | XLOC_025411 |
| TCONS_00050132 | lncRNA | downstream | 28263 | 29406013 ~ 29409959 (+) | True | XLOC_025412 |
| TCONS_00052696 | lncRNA | downstream | 262234 | 29639984 ~ 29640294 (+) | True | XLOC_025417 |
| TCONS_00050149 | lncRNA | downstream | 286607 | 29664357 ~ 29671653 (+) | False | XLOC_025419 |
| TCONS_00052697 | lncRNA | downstream | 291323 | 29669073 ~ 29669897 (+) | True | XLOC_025419 |
| TCONS_00050127 | mRNA | upstream | 217811 | 28953357 ~ 28961518 (+) | True | XLOC_025408 |
| TCONS_00050126 | mRNA | upstream | 219072 | 28953274 ~ 28960257 (+) | False | XLOC_025408 |
| TCONS_00050125 | mRNA | upstream | 232573 | 28939759 ~ 28946756 (+) | True | XLOC_025407 |
| TCONS_00050123 | mRNA | upstream | 309689 | 28860283 ~ 28869640 (+) | False | XLOC_025405 |
| TCONS_00050121 | mRNA | upstream | 325394 | 28831622 ~ 28853935 (+) | False | XLOC_025404 |
| TCONS_00050133 | mRNA | downstream | 67723 | 29445473 ~ 29468859 (+) | False | XLOC_025413 |
| TCONS_00050134 | mRNA | downstream | 80767 | 29458517 ~ 29468031 (+) | True | XLOC_025413 |
| TCONS_00050135 | mRNA | downstream | 91533 | 29469283 ~ 29483891 (+) | False | XLOC_025414 |
| TCONS_00050137 | mRNA | downstream | 98335 | 29476085 ~ 29486498 (+) | False | XLOC_025414 |
| TCONS_00050136 | mRNA | downstream | 98335 | 29476085 ~ 29486498 (+) | True | XLOC_025414 |
| TCONS_00050129 | other | upstream | 12182 | 29167020 ~ 29167147 (+) | True | XLOC_025410 |
| TCONS_00050124 | other | upstream | 313247 | 28861176 ~ 28866082 (+) | True | XLOC_025405 |
| TCONS_00050119 | other | upstream | 328895 | 28831518 ~ 28850434 (+) | False | XLOC_025404 |
| TCONS_00050090 | other | upstream | 1772118 | 27407096 ~ 27407211 (+) | True | XLOC_025392 |
| TCONS_00050085 | other | upstream | 2105197 | 27071773 ~ 27074132 (+) | True | XLOC_025389 |
| TCONS_00050143 | other | downstream | 263244 | 29640994 ~ 29654697 (+) | False | XLOC_025418 |
| TCONS_00050146 | other | downstream | 264450 | 29642200 ~ 29654921 (+) | False | XLOC_025418 |
| TCONS_00050147 | other | downstream | 270372 | 29648122 ~ 29649158 (+) | False | XLOC_025418 |
| TCONS_00050148 | other | downstream | 276410 | 29654160 ~ 29654925 (+) | True | XLOC_025418 |
| TCONS_00050160 | other | downstream | 870989 | 30248739 ~ 30249036 (+) | True | XLOC_025429 |
