RNA id: TCONS_00050136


Basic Information

Item Value
RNA id TCONS_00050136
length 4179
RNA type mRNA
GC content 0.39
exon number 3
gene id XLOC_025414
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 29469283 ~ 29486498 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGACCTGGTGACGGACCTGCTGATCCTACAGGATCTCCTGGATGCTGCGAGTAAGAGAGGGGTGGCTGTGTATTTGCTGCTGGAGGAGAATGGCCTGCCACACTTCCTGGACATGAGCAGCAGGCTGCAGATTTCTGCACAGCACCTGAGGAACCTGCGGGTGCAAACGGTGAGGGGCTCAGGCATGCCGCTGTCCTTTGGGCGTCTACCAGGATCCCTGTGTTCAAAGTATATGTTGGTTGATGGAGAGAAAGTAATGTTTGGATCATACAGGTTAGAATGTAGACCAAGCAGTAAACCTTGTTATTTTGTTCATTATTGGCATGCACTAATATGCTTTACTTTCAATCATAGCTTTACATGGAGTTCCTCTAGGATGAATCGTAACACAATCACTGTGATGTCAGGACAAGTTGTTGACTTCTTTGACAACGATTTCAGAGAACTATATGCCGTGTCTGATAAAGTGGACTTGTATCGTGAGTTTCACATCAGTAAGCCTGCAATGCAAGTTCCTGTGTTGAAAACGCCATCGGAACCCATCAAACTCACAGTTCCCGTGTCCATGTCGCGCTTCCAGATCTCTGTAGGAGACACCAAACCAGTGGACCTAAAGGTGCCTGCACATAAATACCATAATCCAAAGTACTCTTTAGTTGTTGGCAATAGCCTAGGCGTGACTGGATCCCTACAGGATCTTTCTAAGCTAAGGGACTATGTTGACCATGCCTCTGTGAGTAACATGGAAAAATTAATCTACACCAATGGGGAAAGTTTACATCCACAGTCTCCTGCGTCCCCAGATGGGACGGAAGACACAAAGGGCGAAGGGAAGAAGCCCTCGCCATTTGGTTCTAAAAAGCAACGCTCTTCGTTTAGGAATTACTTGAAAGGCAGAGCTAACAACCAAAGTCCAGGCGCTCTTACTAAAACAACCCATCAAAACATAGACGCCAAACAGAACAGTCCTAAAGACATTAAGCCTACCAGCCACTCCAAGGAAGCATCGTGGTTAGACAATCATGTTAAGGAGAAAGAAGAGCCATCCAGACACCTGAGTCCTGCTCCTCGAAAGATTTCAGATGCTGACAGCACCAATGAGGTCGAGGACACTTTTGAGTTCATAGAGAATCCACCGCAGGTGAAGTTTAAGCTCAAAAAGAACAAACTGGGTCCTCGGAGTGTTTCTCTTCAGACTATTGCCACAGATGGTGAGGATGGTCCAAGAGGACGGAGGCGTACCCAGAAGAAGAACTGTATTCAGTCCTGATTTCTATTTCTGCTGGAGGAATCAATCAACATCTTCATGCGTGCTAACAGATCAGCATTTTGGATAGCAGAACAGGTTGTaacaagaacaataataatatgcgatgtaaaaaaaatagattttttttaaattctgtacAATTTGGACAAGATGTGAACAATGTTTCCTCCTACAATAATACTAATTCAGCTGCCTGCTGATAAAGTATTGGTGCTGTATTTTTTGAGGGATGTGAAGTGGTTTGGACAACCTCCAAATTGTTGCTGATTCAGCAAGCTGCTGCCAGAAACCAAATGACTAATATAATTTGCACACTGAGATCATGTGGCCTTCATTCACAGTTACGAAGCTTAAAGTTAAACCTCGGAGAGCTTTGAAAGTAAGGGTCTGAAAATGTAGCATGTGTTGTTTTCCGTTCAGCTGATCTCTACCCTGCATATTTGCATATCAGTTCCACTTACTCAATCCTCTTTCATAAATGAAGGGAAAAGGTCCACAGCAAAGATGACTAATAAAAACAGGTCCTTTTACCACTAATGCGCAGTTCTATAATCCAGTCATTTCAGTGGAAATTTTGCATGAGGACAAAAAACAAGGAGATTTACATCAATCATGTAAAATTGCTGTTTCCAATCAAGCTTTAAAAGTGACTTCTGTGAGAGCAGTGAGCTCATTTTTTTTGGCTTGCTTTTGAAATTTTGCTAATGTGAagtctgtaaaaaacaaaatacttATGGTGTTATGTTGGGAAGATTAGtacctttattttttcttttacatttttatcatattttcCTAAATataagtactttttttttaacatgctaAAACTTGTATTCCCAATTGCCTTTTATAATTCATTTAACAGCAATCAAGCAAAACATGCACCAAAGCACGCACACTTTAGATTAGTGTCGGATGATTGACACAGAAGTACTTGTTTAGAGCATTTCTCTCTAGtttcactttaaaaacatttgtttgggcttgtcatttttaaaacacattattgtGAATCCCACTATAATTGAAAGGATcccacacctgcagttctccacaaTAGACGCCaagtgttctccagcctctgtaacctagactgcagctcctcacaggaagtttggccagaggagaaatggtcgtgcccaactgagcctggtttctgtcaaggttttttttcccccttcactttcatcaattggtgaagtttgttcctctccactggcttgcttggattgggacttgtggagctgcgcatcgacgaatttgctcttcagtgtttggacttccagctgtgaaaattaaatcacactgaacagaactgaactctgaaaactggacggacacagtttcaatttactagaacttctatgtgaagctgctttgacaaaatctacattgtaaaagcgctatagaaataaacatgaattgaatggaTTTGTTTTAGAATGACAGGAACTAAAATACATGATCATATATTTTGTACAGTACCTGTGTTGTTTTTAGGTCTATGACAGCATAGTTTGCATTACTTTTAATTAAGTTATAAAATGTGGCTTCTCTTTTAGTCTCaacaatgtaattttaatgtGTGACTTTTTTACCAAACATACGGTATGTATGATACGTATGGTGTGTGTTTCTTATGAACCCatacaaatgtttgtttaaagACACAAAATGCAACACTGAGGCAGAATGAATGAGAATGTATCAAGAAGGGTTCttataaacaaatttttactTTGACATTCAAAATGGACATCTAGCatgttttattaaagaaaatatcACAATGCAGGGCACCGAAACACCTAAAATGCACTATGAGTGAATTCCTTTGGTTTGGAAAGAATACAGGAGTAGGACAGAATTGATGTTTTGATCATGAATCCTATTAAATAAAGGATCCCTAACTTATATAAGGCTTTTTTTATGTAACTTAAGATTATGTGACCTTGCACTGTGATGGCAGAAAGACAATATGCTTAATTGACCATATATGGGTTGAATCAGGCCTAATTGTCTAATGGCTAAAAGGTACTTTCTCTCAGCTTACTAGTTTAATTATTGTAGATCATCAAACCTCATTACAGGCTGCTATTTTTAGAAAATGACACCTGCTGAAAAACCTGTATTAACACAACTCATCTTTGATTAATGTAGCAATTATGTAGACACCAGTGagatctagaaaaaaaaaatgaatatgtttCATATCACTATTCTGACGCACTCAATGAATTCAGTCTTGAATAAAAAGTTGTTttcttaaataaacattaattataagTTGAGAGTTTAACTGATGTAAAGTCTGGTAAATTCCACAGAATCTGTAGTCATGTCAGCTTTAATAAGTGCTGCAGACTCTTACTATTGACTAttaactttttttcagtttagctCAAGAGACAGGTCTGACCACTGAAAACACAACCGCCATTATCTCAGCGCCTCTCAGGTTATTCGCGGACAGGCTGAATGGTCTGTATATATTGTACAATGGTTTGGTTGTTTTGTACAGATTGAGGTGACAGATAATACAAAATAGAAGACATCCTAAAACAGCAGAAACACAGCTGTGATGTTGTACTTACAGTGACGTCCACAATAACTGGCCATACACAAACATCTTCAGTGATAGCTACGTCAACAGAGCTGTTAGGCTAACATGGGTGTGAAATTTGTCTTCTCTTGTTTGTTAatggtattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgcgacAGCAAGTAAGTCGTTTCTCTAAGGATTAGGTAAAGGATAAAAACTTTACAACTTTTTCCCGTCAGTCTTTGTAGGAA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0019901 protein kinase binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090624-5 Predicted to enable protein kinase binding activity. Predicted to be involved in signal transduction. Orthologous to human FAM83F (family with sequence similarity 83 member F).

Ensembl:

ensembl_id ENSDART00000181058

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00050132 lncRNA upstream 66126 29406013 ~ 29409959 (+) True XLOC_025412
TCONS_00052695 lncRNA upstream 77934 29393465 ~ 29398151 (+) True XLOC_025411
TCONS_00052345 lncRNA upstream 550010 28899129 ~ 28926075 (+) True XLOC_025406
TCONS_00050122 lncRNA upstream 632909 28842122 ~ 28843176 (+) True XLOC_025404
TCONS_00052694 lncRNA upstream 692328 28765693 ~ 28783757 (+) True XLOC_025403
TCONS_00052696 lncRNA downstream 153486 29639984 ~ 29640294 (+) True XLOC_025417
TCONS_00050149 lncRNA downstream 177859 29664357 ~ 29671653 (+) False XLOC_025419
TCONS_00052697 lncRNA downstream 182575 29669073 ~ 29669897 (+) True XLOC_025419
TCONS_00052698 lncRNA downstream 201051 29687549 ~ 29710222 (+) False XLOC_025420
TCONS_00052700 lncRNA downstream 201057 29687555 ~ 29699638 (+) False XLOC_025420
TCONS_00050133 mRNA upstream 7226 29445473 ~ 29468859 (+) False XLOC_025413
TCONS_00050134 mRNA upstream 8054 29458517 ~ 29468031 (+) True XLOC_025413
TCONS_00050128 mRNA upstream 97655 29082267 ~ 29378430 (+) False XLOC_025409
TCONS_00050131 mRNA upstream 98335 29179329 ~ 29377750 (+) False XLOC_025409
TCONS_00050130 mRNA upstream 98335 29179329 ~ 29377750 (+) True XLOC_025409
TCONS_00050139 mRNA downstream 24320 29510818 ~ 29544039 (+) False XLOC_025415
TCONS_00050138 mRNA downstream 24320 29510818 ~ 29544039 (+) False XLOC_025415
TCONS_00050140 mRNA downstream 24345 29510843 ~ 29543269 (+) True XLOC_025415
TCONS_00050141 mRNA downstream 114419 29600917 ~ 29602479 (+) True XLOC_025416
TCONS_00050142 mRNA downstream 154339 29640837 ~ 29654923 (+) False XLOC_025418
TCONS_00050129 other upstream 308938 29167020 ~ 29167147 (+) True XLOC_025410
TCONS_00050124 other upstream 610003 28861176 ~ 28866082 (+) True XLOC_025405
TCONS_00050119 other upstream 625651 28831518 ~ 28850434 (+) False XLOC_025404
TCONS_00050090 other upstream 2068874 27407096 ~ 27407211 (+) True XLOC_025392
TCONS_00050085 other upstream 2401953 27071773 ~ 27074132 (+) True XLOC_025389
TCONS_00050143 other downstream 154496 29640994 ~ 29654697 (+) False XLOC_025418
TCONS_00050146 other downstream 155702 29642200 ~ 29654921 (+) False XLOC_025418
TCONS_00050147 other downstream 161624 29648122 ~ 29649158 (+) False XLOC_025418
TCONS_00050148 other downstream 167662 29654160 ~ 29654925 (+) True XLOC_025418
TCONS_00050160 other downstream 762241 30248739 ~ 30249036 (+) True XLOC_025429