Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00050139 |
| length | 4898 |
| RNA type | mRNA |
| GC content | 0.35 |
| exon number | 6 |
| gene id | XLOC_025415 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007114.7 |
| NCBI id | CM002887.2 |
| chromosome length | 62628489 |
| location | 29510818 ~ 29544039 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:1905517 | macrophage migration | biological_process |
| GO:0032878 | regulation of establishment or maintenance of cell polarity | biological_process |
| GO:0042742 | defense response to bacterium | biological_process |
| GO:1902622 | regulation of neutrophil migration | biological_process |
| GO:0090022 | regulation of neutrophil chemotaxis | biological_process |
| GO:0001780 | neutrophil homeostasis | biological_process |
| GO:0007264 | small GTPase mediated signal transduction | biological_process |
| GO:0009611 | response to wounding | biological_process |
| GO:0048246 | macrophage chemotaxis | biological_process |
| GO:0043652 | engulfment of apoptotic cell | biological_process |
| GO:0032956 | regulation of actin cytoskeleton organization | biological_process |
| GO:0007015 | actin filament organization | biological_process |
| GO:0002685 | regulation of leukocyte migration | biological_process |
| GO:0016601 | Rac protein signal transduction | biological_process |
| GO:0030593 | neutrophil chemotaxis | biological_process |
| GO:0030865 | cortical cytoskeleton organization | biological_process |
| GO:0030031 | cell projection assembly | biological_process |
| GO:0002446 | neutrophil mediated immunity | biological_process |
| GO:0030036 | actin cytoskeleton organization | biological_process |
| GO:0008045 | motor neuron axon guidance | biological_process |
| GO:1990266 | neutrophil migration | biological_process |
| GO:0008360 | regulation of cell shape | biological_process |
| GO:0050832 | defense response to fungus | biological_process |
| GO:0007163 | establishment or maintenance of cell polarity | biological_process |
| GO:2000391 | positive regulation of neutrophil extravasation | biological_process |
| GO:0042995 | cell projection | cellular_component |
| GO:0005856 | cytoskeleton | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0005938 | cell cortex | cellular_component |
| GO:0031410 | cytoplasmic vesicle | cellular_component |
| GO:0031982 | vesicle | cellular_component |
| GO:0043231 | intracellular membrane-bounded organelle | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0003924 | GTPase activity | molecular_function |
| GO:0005525 | GTP binding | molecular_function |
| GO:0019901 | protein kinase binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| id | description |
|---|---|
| ko04010 | MAPK signaling pathway |
| ko04014 | Ras signaling pathway |
| ko04015 | Rap1 signaling pathway |
| ko04310 | Wnt signaling pathway |
| ko04370 | VEGF signaling pathway |
| ko04071 | Sphingolipid signaling pathway |
| ko04024 | cAMP signaling pathway |
| ko04510 | Focal adhesion |
| ko04520 | Adherens junction |
| ko04810 | Regulation of actin cytoskeleton |
| ko04613 | Neutrophil extracellular trap formation |
| ko04650 | Natural killer cell mediated cytotoxicity |
| ko04662 | B cell receptor signaling pathway |
| ko04664 | Fc epsilon RI signaling pathway |
| ko04666 | Fc gamma R-mediated phagocytosis |
| ko04670 | Leukocyte transendothelial migration |
| ko04062 | Chemokine signaling pathway |
| ko04360 | Axon guidance |
| ko05200 | Pathways in cancer |
| ko05231 | Choline metabolism in cancer |
| ko05210 | Colorectal cancer |
| ko05212 | Pancreatic cancer |
| ko05170 | Human immunodeficiency virus 1 infection |
| ko05163 | Human cytomegalovirus infection |
| ko05135 | Yersinia infection |
| ko05020 | Prion disease |
| ko05418 | Fluid shear stress and atherosclerosis |
| ko05415 | Diabetic cardiomyopathy |
| ko05416 | Viral myocarditis |
| ko04031 | GTP-binding proteins |
| id | description |
|---|---|
| ZDB-GENE-040625-27 | Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Acts upstream of or within several processes, including defense response to other organism; leukocyte chemotaxis; and regulation of neutrophil migration. Located in cytoplasm. Is expressed in neutrophil and thymus. Human ortholog(s) of this gene implicated in immunodeficiency 73a with defective neutrophil chemotaxis and leukocytosis; immunodeficiency 73b with defective neutrophil chemotaxis and lymphopenia; and immunodeficiency 73c with defective neutrophil chemotaxis and hypogammaglobulinemia. Orthologous to human RAC2 (Rac family small GTPase 2). |
| ensembl_id | ENSDART00000193743 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00050132 | lncRNA | upstream | 100859 | 29406013 ~ 29409959 (+) | True | XLOC_025412 |
| TCONS_00052695 | lncRNA | upstream | 112667 | 29393465 ~ 29398151 (+) | True | XLOC_025411 |
| TCONS_00052345 | lncRNA | upstream | 584743 | 28899129 ~ 28926075 (+) | True | XLOC_025406 |
| TCONS_00050122 | lncRNA | upstream | 667642 | 28842122 ~ 28843176 (+) | True | XLOC_025404 |
| TCONS_00052694 | lncRNA | upstream | 727061 | 28765693 ~ 28783757 (+) | True | XLOC_025403 |
| TCONS_00052696 | lncRNA | downstream | 95945 | 29639984 ~ 29640294 (+) | True | XLOC_025417 |
| TCONS_00050149 | lncRNA | downstream | 120318 | 29664357 ~ 29671653 (+) | False | XLOC_025419 |
| TCONS_00052697 | lncRNA | downstream | 125034 | 29669073 ~ 29669897 (+) | True | XLOC_025419 |
| TCONS_00052698 | lncRNA | downstream | 143510 | 29687549 ~ 29710222 (+) | False | XLOC_025420 |
| TCONS_00052700 | lncRNA | downstream | 143516 | 29687555 ~ 29699638 (+) | False | XLOC_025420 |
| TCONS_00050137 | mRNA | upstream | 24320 | 29476085 ~ 29486498 (+) | False | XLOC_025414 |
| TCONS_00050136 | mRNA | upstream | 24320 | 29476085 ~ 29486498 (+) | True | XLOC_025414 |
| TCONS_00050135 | mRNA | upstream | 26927 | 29469283 ~ 29483891 (+) | False | XLOC_025414 |
| TCONS_00050133 | mRNA | upstream | 41959 | 29445473 ~ 29468859 (+) | False | XLOC_025413 |
| TCONS_00050134 | mRNA | upstream | 42787 | 29458517 ~ 29468031 (+) | True | XLOC_025413 |
| TCONS_00050141 | mRNA | downstream | 56878 | 29600917 ~ 29602479 (+) | True | XLOC_025416 |
| TCONS_00050142 | mRNA | downstream | 96798 | 29640837 ~ 29654923 (+) | False | XLOC_025418 |
| TCONS_00050144 | mRNA | downstream | 96957 | 29640996 ~ 29654922 (+) | False | XLOC_025418 |
| TCONS_00050145 | mRNA | downstream | 97142 | 29641181 ~ 29642116 (+) | False | XLOC_025418 |
| TCONS_00050151 | mRNA | downstream | 170736 | 29714775 ~ 29845175 (+) | True | XLOC_025421 |
| TCONS_00050129 | other | upstream | 343671 | 29167020 ~ 29167147 (+) | True | XLOC_025410 |
| TCONS_00050124 | other | upstream | 644736 | 28861176 ~ 28866082 (+) | True | XLOC_025405 |
| TCONS_00050119 | other | upstream | 660384 | 28831518 ~ 28850434 (+) | False | XLOC_025404 |
| TCONS_00050090 | other | upstream | 2103607 | 27407096 ~ 27407211 (+) | True | XLOC_025392 |
| TCONS_00050085 | other | upstream | 2436686 | 27071773 ~ 27074132 (+) | True | XLOC_025389 |
| TCONS_00050143 | other | downstream | 96955 | 29640994 ~ 29654697 (+) | False | XLOC_025418 |
| TCONS_00050146 | other | downstream | 98161 | 29642200 ~ 29654921 (+) | False | XLOC_025418 |
| TCONS_00050147 | other | downstream | 104083 | 29648122 ~ 29649158 (+) | False | XLOC_025418 |
| TCONS_00050148 | other | downstream | 110121 | 29654160 ~ 29654925 (+) | True | XLOC_025418 |
| TCONS_00050160 | other | downstream | 704700 | 30248739 ~ 30249036 (+) | True | XLOC_025429 |
