Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00050146 |
| length | 740 |
| RNA type | nonsense_mediated_decay |
| GC content | 0.50 |
| exon number | 8 |
| gene id | XLOC_025418 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007114.7 |
| NCBI id | CM002887.2 |
| chromosome length | 62628489 |
| location | 29640837 ~ 29654925 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0001732 | formation of cytoplasmic translation initiation complex | biological_process |
| GO:0006412 | translation | biological_process |
| GO:0006413 | translational initiation | biological_process |
| GO:0002191 | cap-dependent translational initiation | biological_process |
| GO:0005852 | eukaryotic translation initiation factor 3 complex | cellular_component |
| GO:0033290 | eukaryotic 48S preinitiation complex | cellular_component |
| GO:0016282 | eukaryotic 43S preinitiation complex | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0098808 | mRNA cap binding | molecular_function |
| GO:0003723 | RNA binding | molecular_function |
| GO:0003743 | translation initiation factor activity | molecular_function |
| id | description |
|---|---|
| ko03012 | Translation factors |
| id | description |
|---|---|
| ZDB-GENE-030131-8442 | Predicted to enable mRNA cap binding activity and translation initiation factor activity. Predicted to be involved in cap-dependent translational initiation. Predicted to act upstream of or within translation. Predicted to be located in cytoplasm. Predicted to be part of eukaryotic translation initiation factor 3 complex. Orthologous to human EIF3D (eukaryotic translation initiation factor 3 subunit D). |
| ensembl_id | ENSDART00000150898 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00052696 | lncRNA | upstream | 1906 | 29639984 ~ 29640294 (+) | True | XLOC_025417 |
| TCONS_00050132 | lncRNA | upstream | 232241 | 29406013 ~ 29409959 (+) | True | XLOC_025412 |
| TCONS_00052695 | lncRNA | upstream | 244049 | 29393465 ~ 29398151 (+) | True | XLOC_025411 |
| TCONS_00052345 | lncRNA | upstream | 716125 | 28899129 ~ 28926075 (+) | True | XLOC_025406 |
| TCONS_00050122 | lncRNA | upstream | 799024 | 28842122 ~ 28843176 (+) | True | XLOC_025404 |
| TCONS_00050149 | lncRNA | downstream | 9436 | 29664357 ~ 29671653 (+) | False | XLOC_025419 |
| TCONS_00052697 | lncRNA | downstream | 14152 | 29669073 ~ 29669897 (+) | True | XLOC_025419 |
| TCONS_00052698 | lncRNA | downstream | 32628 | 29687549 ~ 29710222 (+) | False | XLOC_025420 |
| TCONS_00052700 | lncRNA | downstream | 32634 | 29687555 ~ 29699638 (+) | False | XLOC_025420 |
| TCONS_00052699 | lncRNA | downstream | 32634 | 29687555 ~ 29699638 (+) | False | XLOC_025420 |
| TCONS_00050145 | mRNA | upstream | 84 | 29641181 ~ 29642116 (+) | False | XLOC_025418 |
| TCONS_00050141 | mRNA | upstream | 39721 | 29600917 ~ 29602479 (+) | True | XLOC_025416 |
| TCONS_00050139 | mRNA | upstream | 98161 | 29510818 ~ 29544039 (+) | False | XLOC_025415 |
| TCONS_00050138 | mRNA | upstream | 98161 | 29510818 ~ 29544039 (+) | False | XLOC_025415 |
| TCONS_00050140 | mRNA | upstream | 98931 | 29510843 ~ 29543269 (+) | True | XLOC_025415 |
| TCONS_00050151 | mRNA | downstream | 59854 | 29714775 ~ 29845175 (+) | True | XLOC_025421 |
| TCONS_00050152 | mRNA | downstream | 226114 | 29881035 ~ 29895974 (+) | True | XLOC_025422 |
| TCONS_00050154 | mRNA | downstream | 286856 | 29941777 ~ 29948955 (+) | False | XLOC_025425 |
| TCONS_00050156 | mRNA | downstream | 287417 | 29942338 ~ 29948404 (+) | False | XLOC_025425 |
| TCONS_00050158 | mRNA | downstream | 325682 | 29980603 ~ 29983868 (+) | True | XLOC_025427 |
| TCONS_00050129 | other | upstream | 475053 | 29167020 ~ 29167147 (+) | True | XLOC_025410 |
| TCONS_00050124 | other | upstream | 776118 | 28861176 ~ 28866082 (+) | True | XLOC_025405 |
| TCONS_00050119 | other | upstream | 791766 | 28831518 ~ 28850434 (+) | False | XLOC_025404 |
| TCONS_00050090 | other | upstream | 2234989 | 27407096 ~ 27407211 (+) | True | XLOC_025392 |
| TCONS_00050085 | other | upstream | 2568068 | 27071773 ~ 27074132 (+) | True | XLOC_025389 |
| TCONS_00050160 | other | downstream | 593818 | 30248739 ~ 30249036 (+) | True | XLOC_025429 |
| TCONS_00050170 | other | downstream | 1039862 | 30694783 ~ 30694872 (+) | True | XLOC_025435 |
| TCONS_00050187 | other | downstream | 1945727 | 31600648 ~ 31603704 (+) | True | XLOC_025451 |
| TCONS_00050194 | other | downstream | 2133600 | 31788521 ~ 31788637 (+) | True | XLOC_025455 |
| TCONS_00050246 | other | downstream | 2877675 | 32532596 ~ 32535126 (+) | False | XLOC_025485 |
