RNA id: TCONS_00052698


Basic Information

Item Value
RNA id TCONS_00052698
length 1465
lncRNA type antisense_over
GC content 0.42
exon number 4
gene id XLOC_025420
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 29687549 ~ 29710222 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTAAGCGTGTTTTTCTACTCCTTTAAAACGCTGAGTTTGACAGAAAAGTGTGGCGTACATTTTGCTCATAATCGACTACAACGTGACAATGAAGATTGAGGATGTTTCATCTTTACATCGTGGCAGATGGTAAATGATGGCAAGTCCACATTTGTTTCAGAGCAGAGACAGCGTTGCAGATGGACAAGAGCGTAAAAGCTTTATTAAGCATCCAACCTCATGTTTCTGCATATTGTGCAGCAGTGGGGGTCAGCTTAATCAATTTAGTCAACTAAAACAAAACAGGACAGCAGGAAGGATAAAACTGGAAACTGCGAAGTGTTATTTATCCTGAAAAGCCATTCTTGGTGTCATGCAGTACTATAAACAAGCTGTATCATTCTCCCcatgaaacacttttacaatcaCGCTGCACACCCGTAAAGATATCCTCTCTCTCGCAGCATCAATGAGATTAAAGTACAAGAATGAAGAGATCTTTAGTAGAGGTAAGCTTTATGATGCGCACATGAAGGGGCATGCAATACCATTTATcactgagtgtgtatgtgtgcatgtggaGGGGTGAGGTTATGTCTGCCATTGCCATGGCAACAGAGTCCCTGTGTAAATTTTGTTTAAACCTTtgctttatttctttgttccaatgTTCTCATTCAGATCAAGTCACACAGCAGCGCCACAAGAAACTTTATTCCTTGTTGGGCTGGTTTGTTCCTGCACTGTCATTCTGGTTCAAAGAATCAACAGTAGACAGTGTGGATTTCTTAGATGAAGACTGGAGAAACACAGAGAAAATACAACATAACCCAGTCTTAAAGAAGAGAGTTCTACTTTTTTTCACGTTTCAGTAGATCACACAGTCAGGCTCAGTGGCCGGAGCCAGGACTCCTGTTTGCTCATTGTTCATTCCAGTGATCATGACACAGCTAATAGAGGCCGGATTAGTGTGCAGGAACAGAGTAGGCAAACACACAGAGACTAATGATGGAGACCAGCCAGTCTGCAATGCTTTCTCGTACTCTAACACCACCTCTGTGGTGTATTTCAGCATTATGGTGTTGGTATGCCCTAAcaaatgtGAAACCACGCTCCCAGTTCCCTGCTTCAGTAAATCTACTAGCCTATATGTTCCCGTCCCCCTTCCTCTCTGTGTTTGTCAGTGTGCTCTCCTCATCTGTCGTCTACGTTTTGAATCCGGAGTGGTCCAGCGCTGTACCAGACTAGAATTTTAAGCATGTCCTTTGGTCAGGAGAAGGGGGCGGTAGAGTCGGTTGCTGTATGCATGAAACTTAAAAAGGCTCTAAAGGAGGACTCTAGCATGATAACGTGCTATGTTATGCGGGTTTGCACCTAAAGGAGTTGATGTATAAAAGAGCATTTttcttatttgtgtttttactggTCTAAGCTGGATGTGGATATGTTGCTTATGTGGgttatttgcataaaataattgatttat

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00050149 lncRNA upstream 15896 29664357 ~ 29671653 (+) False XLOC_025419
TCONS_00052697 lncRNA upstream 17652 29669073 ~ 29669897 (+) True XLOC_025419
TCONS_00052696 lncRNA upstream 47255 29639984 ~ 29640294 (+) True XLOC_025417
TCONS_00050132 lncRNA upstream 277590 29406013 ~ 29409959 (+) True XLOC_025412
TCONS_00052695 lncRNA upstream 289398 29393465 ~ 29398151 (+) True XLOC_025411
TCONS_00052346 lncRNA downstream 204222 29914444 ~ 29915357 (+) True XLOC_025423
TCONS_00050153 lncRNA downstream 219360 29929582 ~ 29929887 (+) True XLOC_025424
TCONS_00050155 lncRNA downstream 232111 29942333 ~ 29943166 (+) False XLOC_025425
TCONS_00052702 lncRNA downstream 232111 29942333 ~ 29945639 (+) False XLOC_025425
TCONS_00050157 lncRNA downstream 232242 29942464 ~ 29945639 (+) True XLOC_025425
TCONS_00050142 mRNA upstream 32626 29640837 ~ 29654923 (+) False XLOC_025418
TCONS_00050144 mRNA upstream 32627 29640996 ~ 29654922 (+) False XLOC_025418
TCONS_00050145 mRNA upstream 45433 29641181 ~ 29642116 (+) False XLOC_025418
TCONS_00050141 mRNA upstream 85070 29600917 ~ 29602479 (+) True XLOC_025416
TCONS_00050139 mRNA upstream 143510 29510818 ~ 29544039 (+) False XLOC_025415
TCONS_00050151 mRNA downstream 4553 29714775 ~ 29845175 (+) True XLOC_025421
TCONS_00050152 mRNA downstream 170813 29881035 ~ 29895974 (+) True XLOC_025422
TCONS_00050154 mRNA downstream 231555 29941777 ~ 29948955 (+) False XLOC_025425
TCONS_00050156 mRNA downstream 232116 29942338 ~ 29948404 (+) False XLOC_025425
TCONS_00050158 mRNA downstream 270381 29980603 ~ 29983868 (+) True XLOC_025427
TCONS_00050148 other upstream 32624 29654160 ~ 29654925 (+) True XLOC_025418
TCONS_00050146 other upstream 32628 29642200 ~ 29654921 (+) False XLOC_025418
TCONS_00050143 other upstream 32852 29640994 ~ 29654697 (+) False XLOC_025418
TCONS_00050147 other upstream 38391 29648122 ~ 29649158 (+) False XLOC_025418
TCONS_00050129 other upstream 520402 29167020 ~ 29167147 (+) True XLOC_025410
TCONS_00050160 other downstream 538517 30248739 ~ 30249036 (+) True XLOC_025429
TCONS_00050170 other downstream 984561 30694783 ~ 30694872 (+) True XLOC_025435
TCONS_00050187 other downstream 1890426 31600648 ~ 31603704 (+) True XLOC_025451
TCONS_00050194 other downstream 2078299 31788521 ~ 31788637 (+) True XLOC_025455
TCONS_00050246 other downstream 2822374 32532596 ~ 32535126 (+) False XLOC_025485

Expression Profile

//