RNA id: TCONS_00052700


Basic Information

Item Value
RNA id TCONS_00052700
length 1795
lncRNA type antisense_over
GC content 0.37
exon number 4
gene id XLOC_025420
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 29687549 ~ 29710222 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGTTTTTCTACTCCTTTAAAACGCTGAGTTTGACAGAAAAGTGTGGCGTACATTTTGCTCATAATCGACTACAACGTGACAATGAAGATTGAGGATGTTTCATCTTTACATCGTGGCAGATGGTAAATGATGGCAAGTCCACATTTGTTTCAGAGCAGAGACAGCGTTGCAGATGGACAAGAGCGTAAAAGCTTTATTAAGCATCCAACCTCATGTTTCTGCATATTGTGCAGCAGTGGGGGTCAGCTTAATCAATTTAGTCAACTAAAACAAAACAGGACAGCAGGAAGGATAAAACTGGAAACTGCGAAGTGTTATTTATCCTGAAAAGCCATTCTTGGTGTCATGCAGTACTATAAACAAGCTGTATCATTCTCCCcatgaaacacttttacaatcaCGCTGCACACCCGTAAAGATATCCTCTCTCTCGCAGCATCAATGAGATTAAAGTACAAGAATGAAGAGATCTTTAGTAGAGATCAAGTCACACAGCAGCGCCACAAGAAACTTTATTCCTTGTTGGGCTGGTTTGTTCCTGCACTGTCATTCTGGTTCAAAGAATCAACAGTAGACAGTGTGGATTTCTTAGATGAAGACTGGAGAAACACAGAGAAAATACAACATAACCCAGTCTTAAAGAAGAGAGTTCTACTTTTTTTCACGTTTCAGGTGAAAATGTGAACTGCCACAATGCTAAGGTGCTCTGGTTCTATTCTCATGCATCCAAAGTctttgctagatggttgctaaggtgcaaTATTCTGAAGAGCTGGGGTATTGCTATTGCTAGgGACAAAAGGAGCTGCATGACTGCATgaaatgtttggaaaaaaagaaactcaacaaATAGACAAACCACCCTCACAATattcacaaaaacaagcacaGCATTTttgaggtcatttctggttaatgatgtcacagTTTCAAGTGATGGATGCTGGACAATGGAGCAGAAGATCTATGTGCAgttaattacaagaataaaactcaaaccgtttaagaAAACCGAGtgtaacaaaccatttaagttcaaaaactaatcctaatgagaaCTAAATAGAGCATTTTAAGGACAGTAAAAACCAATAAATGAAGATAACTTTAACCAACAGAGTTCTGTTTTTAAGTTAAGACAgttcaaactgtttgaggaaagtaattgctacaaaccatttgagttaaaaactaatctatatgagttctgtaaacttgctccatttaagttgaagtaatgaagtatttaattaactaattctcttcaacactgagttcaaaactctttttaaatgagcagaattaactttcagtcaattctgAGTTctaaactacactcatttcatttgataaagttgactgttgagttttacagtgtgtataaaTAGTCCTGGTAATCAGTCCTTAAgtagctcccagctgtgtgtgtatgtgtgtataatgaACTGAACATCAGAACAGGTGTGTGTATGAAGTGCATGGTGGGATTTGTAGATTGTTGACATAATTCCAGAAGTTGTCTGTTTAACAACGATCTGCCAGATCTCTGGTGATTATAACACACAAAATGTACCTGTTTCTTGGAATGGATGTGAATGTTGCTTTATGCTCTAGTTCTAGCTCTAATTGTATGGCACTTTACCAGTGTTACTGTTTGAACGGTTCTAACTatcacagtgcacacacacagtctcctCTGGTCCAGATTAAGCACACAATGATATCACAGAAAATCCGGCGCCTTTACGAAGTGTAAAAGCTCACATGTAATTTACTATCATTTACCAAAGGGTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00050149 lncRNA upstream 15902 29664357 ~ 29671653 (+) False XLOC_025419
TCONS_00052697 lncRNA upstream 17658 29669073 ~ 29669897 (+) True XLOC_025419
TCONS_00052696 lncRNA upstream 47261 29639984 ~ 29640294 (+) True XLOC_025417
TCONS_00050132 lncRNA upstream 277596 29406013 ~ 29409959 (+) True XLOC_025412
TCONS_00052695 lncRNA upstream 289404 29393465 ~ 29398151 (+) True XLOC_025411
TCONS_00052346 lncRNA downstream 214806 29914444 ~ 29915357 (+) True XLOC_025423
TCONS_00050153 lncRNA downstream 229944 29929582 ~ 29929887 (+) True XLOC_025424
TCONS_00050155 lncRNA downstream 242695 29942333 ~ 29943166 (+) False XLOC_025425
TCONS_00052702 lncRNA downstream 242695 29942333 ~ 29945639 (+) False XLOC_025425
TCONS_00050157 lncRNA downstream 242826 29942464 ~ 29945639 (+) True XLOC_025425
TCONS_00050142 mRNA upstream 32632 29640837 ~ 29654923 (+) False XLOC_025418
TCONS_00050144 mRNA upstream 32633 29640996 ~ 29654922 (+) False XLOC_025418
TCONS_00050145 mRNA upstream 45439 29641181 ~ 29642116 (+) False XLOC_025418
TCONS_00050141 mRNA upstream 85076 29600917 ~ 29602479 (+) True XLOC_025416
TCONS_00050139 mRNA upstream 143516 29510818 ~ 29544039 (+) False XLOC_025415
TCONS_00050151 mRNA downstream 15137 29714775 ~ 29845175 (+) True XLOC_025421
TCONS_00050152 mRNA downstream 181397 29881035 ~ 29895974 (+) True XLOC_025422
TCONS_00050154 mRNA downstream 242139 29941777 ~ 29948955 (+) False XLOC_025425
TCONS_00050156 mRNA downstream 242700 29942338 ~ 29948404 (+) False XLOC_025425
TCONS_00050158 mRNA downstream 280965 29980603 ~ 29983868 (+) True XLOC_025427
TCONS_00050148 other upstream 32630 29654160 ~ 29654925 (+) True XLOC_025418
TCONS_00050146 other upstream 32634 29642200 ~ 29654921 (+) False XLOC_025418
TCONS_00050143 other upstream 32858 29640994 ~ 29654697 (+) False XLOC_025418
TCONS_00050147 other upstream 38397 29648122 ~ 29649158 (+) False XLOC_025418
TCONS_00050129 other upstream 520408 29167020 ~ 29167147 (+) True XLOC_025410
TCONS_00050160 other downstream 549101 30248739 ~ 30249036 (+) True XLOC_025429
TCONS_00050170 other downstream 995145 30694783 ~ 30694872 (+) True XLOC_025435
TCONS_00050187 other downstream 1901010 31600648 ~ 31603704 (+) True XLOC_025451
TCONS_00050194 other downstream 2088883 31788521 ~ 31788637 (+) True XLOC_025455
TCONS_00050246 other downstream 2832958 32532596 ~ 32535126 (+) False XLOC_025485

Expression Profile

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