RNA id: TCONS_00050155


Basic Information

Item Value
RNA id TCONS_00050155
length 665
lncRNA type retained_intron
GC content 0.35
exon number 3
gene id XLOC_025425
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 29941777 ~ 29948955 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAACAATGCTTTCTGTTTCCTCACAGGTGTTTACATCAATAGAAATGTCTACTGAGGATTTCTGTGAGCTGGACTGTGAGTCTTTGGGACCCCTGGACAATGTACAGATGGAGTTGAACAAATGCAAGAAAACGTATAAAGCATTACTGAATGAGCAAAAAATACTGAGAGACGGCATTGACAACAACAAAGAATTTGCTAAGAAATTTAGAGAGCGAGCTGAGGAGCAGAAAGAGTCAAATGAGAATGAAAACAAGAAGCGAAGTAAAAAAATTCAGTCTGAGAAGgtctgttttattaaatatagaCTATTTtgatactatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctaaatgggATCTTCTGTGTGCAGGAGAAATGCAGGGCTATAGAAAGTCATAATACTAAGCAACGGATGGAGATCCTGAAAATCAAAGAGGAGTTGCAAAGCCTGGACAATAAAAACAGCAGCCTGAAAAAGCAAActgaggtttcaaaatattctcACATTTCATAGTTGCTGAACTAAATGGACTGTGTGACTTTAGATTATACTATCAGTACAATACATGCTGATAGAGAATGTATGCCGCAATAACCTTAATGG

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-100311-2 Predicted to be active in nucleus. Orthologous to human IFI35 (interferon induced protein 35).

Ensembl:

ensembl_id ENSDART00000151111

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00050153 lncRNA upstream 12446 29929582 ~ 29929887 (+) True XLOC_025424
TCONS_00052346 lncRNA upstream 26976 29914444 ~ 29915357 (+) True XLOC_025423
TCONS_00052701 lncRNA upstream 232111 29687555 ~ 29710222 (+) False XLOC_025420
TCONS_00052700 lncRNA upstream 242695 29687555 ~ 29699638 (+) False XLOC_025420
TCONS_00052347 lncRNA downstream 23617 29966783 ~ 29967070 (+) True XLOC_025426
TCONS_00052703 lncRNA downstream 374653 30317819 ~ 30347523 (+) False XLOC_025430
TCONS_00050164 lncRNA downstream 374687 30317853 ~ 30346789 (+) False XLOC_025430
TCONS_00052704 lncRNA downstream 374687 30317853 ~ 30347523 (+) False XLOC_025430
TCONS_00052705 lncRNA downstream 374687 30317853 ~ 30353255 (+) True XLOC_025430
TCONS_00050152 mRNA upstream 46359 29881035 ~ 29895974 (+) True XLOC_025422
TCONS_00050151 mRNA upstream 97158 29714775 ~ 29845175 (+) True XLOC_025421
TCONS_00050142 mRNA upstream 287410 29640837 ~ 29654923 (+) False XLOC_025418
TCONS_00050158 mRNA downstream 37437 29980603 ~ 29983868 (+) True XLOC_025427
TCONS_00050159 mRNA downstream 247253 30190419 ~ 30200557 (+) True XLOC_025428
TCONS_00050161 mRNA downstream 314416 30257582 ~ 30318595 (+) False XLOC_025430
TCONS_00050162 mRNA downstream 314544 30257710 ~ 30317451 (+) False XLOC_025430
TCONS_00050163 mRNA downstream 314552 30257718 ~ 30317654 (+) False XLOC_025430
TCONS_00050148 other upstream 287408 29654160 ~ 29654925 (+) True XLOC_025418
TCONS_00050146 other upstream 287412 29642200 ~ 29654921 (+) False XLOC_025418
TCONS_00050143 other upstream 287636 29640994 ~ 29654697 (+) False XLOC_025418
TCONS_00050147 other upstream 293175 29648122 ~ 29649158 (+) False XLOC_025418
TCONS_00050129 other upstream 775186 29167020 ~ 29167147 (+) True XLOC_025410
TCONS_00050160 other downstream 305573 30248739 ~ 30249036 (+) True XLOC_025429
TCONS_00050170 other downstream 751617 30694783 ~ 30694872 (+) True XLOC_025435
TCONS_00050187 other downstream 1657482 31600648 ~ 31603704 (+) True XLOC_025451
TCONS_00050194 other downstream 1845355 31788521 ~ 31788637 (+) True XLOC_025455
TCONS_00050246 other downstream 2589430 32532596 ~ 32535126 (+) False XLOC_025485

Expression Profile

//