RNA id: TCONS_00050157


Basic Information

Item Value
RNA id TCONS_00050157
length 714
lncRNA type retained_intron
GC content 0.44
exon number 6
gene id XLOC_025425
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 29941777 ~ 29948955 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTCAACTCAGGATTTCTGTGAGCTGGACTGTGAGTCTTTGGGACCCCTGGACAATGTACAGATGGAGTTGAACAAATGCAAGAAAACGTATAAAGCATTACTGAATGAGCAAAAAATACTGAGAGACGGCATTGACAACAACAAAGAATTTGCTAAGAAATTTAGAGAGCGAGCTGAGGAGCAGAAAGAGTCAAATGAGAATGAAAACAAGAAGCGAAGTAAAAAAATTCAGTCTGAGAAGGAGAAATGCAGGGCTATAGAAAGTCATAATACTAAGCAACGGATGGAGATCCTGAAAATCAAAGAGGAGTTGCAAAGCCTGGACAATAAAAACAGCAGCCTGAAAAAGCAAActgagATCTCCACAGCAGTGCCCGAGAGGAAGGTTGTATTTGAGGGAAAGACAAAAAATGGTGCACATGCTACGAGTTTTGATGTGAAATCCCAAATAGTTTATCCGATGGAAGGTGGAACGGCCCTGATCACCTTTGAGGAGGAGGATGTGGCCCAGAACATCTTGAGCCAGCAGAAGCATTTGGTGGCACTCGGGGAATGTGGCATCACTGTACAGGCTAAACCCATTCAGTTCCTGGTACCCGGCTATGTTGAGATGGAAACTCAGGTTTGCTCACACAGAATCTTAGTCTCCAACTTACCAATAGAAGAACCAGAAGAGCGAATACTAGACAAACTGGACATCCACTTCTCTAGG

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-100311-2 Predicted to be active in nucleus. Orthologous to human IFI35 (interferon induced protein 35).

Ensembl:

ensembl_id ENSDART00000151072

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00050153 lncRNA upstream 12577 29929582 ~ 29929887 (+) True XLOC_025424
TCONS_00052346 lncRNA upstream 27107 29914444 ~ 29915357 (+) True XLOC_025423
TCONS_00052701 lncRNA upstream 232242 29687555 ~ 29710222 (+) False XLOC_025420
TCONS_00052699 lncRNA upstream 242826 29687555 ~ 29699638 (+) False XLOC_025420
TCONS_00052347 lncRNA downstream 21144 29966783 ~ 29967070 (+) True XLOC_025426
TCONS_00052703 lncRNA downstream 372180 30317819 ~ 30347523 (+) False XLOC_025430
TCONS_00050164 lncRNA downstream 372214 30317853 ~ 30346789 (+) False XLOC_025430
TCONS_00052704 lncRNA downstream 372214 30317853 ~ 30347523 (+) False XLOC_025430
TCONS_00052705 lncRNA downstream 372214 30317853 ~ 30353255 (+) True XLOC_025430
TCONS_00050152 mRNA upstream 46490 29881035 ~ 29895974 (+) True XLOC_025422
TCONS_00050151 mRNA upstream 97289 29714775 ~ 29845175 (+) True XLOC_025421
TCONS_00050142 mRNA upstream 287541 29640837 ~ 29654923 (+) False XLOC_025418
TCONS_00050158 mRNA downstream 34964 29980603 ~ 29983868 (+) True XLOC_025427
TCONS_00050159 mRNA downstream 244780 30190419 ~ 30200557 (+) True XLOC_025428
TCONS_00050161 mRNA downstream 311943 30257582 ~ 30318595 (+) False XLOC_025430
TCONS_00050162 mRNA downstream 312071 30257710 ~ 30317451 (+) False XLOC_025430
TCONS_00050163 mRNA downstream 312079 30257718 ~ 30317654 (+) False XLOC_025430
TCONS_00050148 other upstream 287539 29654160 ~ 29654925 (+) True XLOC_025418
TCONS_00050146 other upstream 287543 29642200 ~ 29654921 (+) False XLOC_025418
TCONS_00050143 other upstream 287767 29640994 ~ 29654697 (+) False XLOC_025418
TCONS_00050147 other upstream 293306 29648122 ~ 29649158 (+) False XLOC_025418
TCONS_00050129 other upstream 775317 29167020 ~ 29167147 (+) True XLOC_025410
TCONS_00050160 other downstream 303100 30248739 ~ 30249036 (+) True XLOC_025429
TCONS_00050170 other downstream 749144 30694783 ~ 30694872 (+) True XLOC_025435
TCONS_00050187 other downstream 1655009 31600648 ~ 31603704 (+) True XLOC_025451
TCONS_00050194 other downstream 1842882 31788521 ~ 31788637 (+) True XLOC_025455
TCONS_00050246 other downstream 2586957 32532596 ~ 32535126 (+) False XLOC_025485

Expression Profile

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