RNA id: TCONS_00004751


Basic Information

Item Value
RNA id TCONS_00004751
length 1896
RNA type mRNA
GC content 0.51
exon number 13
gene id XLOC_002551
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 5823759 ~ 5847904 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGAGTTCAACTCTTCATCTGTTTTTGAGCAGCACaaagAAGCTGCTGAGGAGGTTGATCTGAATGTGGTTTACCAGGCAGCAGCGAACGGTGATGTCAACACGCTGACCACTGTCATACGAGAAGACCCCTCCATCCTCGAGTGCTGTGATGGCGAAGGCTCTACACCTCTGATGCATGCAGTGTCTGGGAGGCAGGTGGACACGGTGAAGCTGCTGCTGAAGATGGGAGCTTCTATCAACACACAAGACGCCTGTGGACGGACGTCCCTCTCTCTCGGGACATACCTGGGCTGGCTGGAAGGCTGTGTGTGTCTGCTTCGTAACGGGGCAAAACAGAACATTCCTGATAAGAACGGACGCTTGCCAATACATGCTGCTACTGCTGAAACAGACTTCAGGCTCATGGCTGTTCTACTACAGCAGTCAACACTGTGTGAAATCAATCATCAAGACAATGAGGGAATGACGGCTCTTCACTGGGCTTGTTTCCACAACCGACCAGAGCATTCACAGGCCCTGCTGCAGAAAGGAGCTGATCCAACACTTGTGGACAAGGACTTTAAAACAGCTCTGCATTGGGCTGTGCAGAGTGGCAGCCGGCTGATGTGTTCCCTCATTCTTGAGCATAATCTGGGTTCCTCCGTGATCAATTACGATGACGAGAACGGGAAGACCTGCGTTCACATCGCTGCCGCTGCCGGTTTCAGTGACATCATCTATGAACTCTCTCGCATTTCTGAGACCAACTTGCAAGCCTTAGATGTGGATGAAAGGACCCCTCTTCACTGGGCCGCTGCAGCAGGGAAAGATGACTGTGTGCAGGTGTTGTTGGAGCTGGGAGTGGAGCCCAGCCCTCGAGATATCAACGAGAATACACCCCTCACATACGCCATGTACTGCGGGCATACGGCCTGCATCAAACTGCTCTCCACGGAAAACAGGTCTGAATCCAGCAGGCCACTGCATGCTCAAAACAGCGACCCTTCAATACGCAAGGAGGGCAAGTTTCGCATGCTAAACCACATCTTCAGCAAGAAGAAAAAAGATCTGCACCCTTGTCAGCAGACAGACTCGAGTCAAGAATGTCAGCTCAAAGAGGAGACATCTGAAGTGGACGACATCATTACCATGTTTGACTGTGTGGCAGAGCCGTTTTCCAGAGATGAGATGCACCTAGTTGAAGACACATCCTGCAAGGACTTTCCAATTCTCCCACCCATCCGCACACAGAGTCTTCCACCAATCACTCTGGGAAAATCCTTGCTTGTAAACTCTCTGGCTCACAGAACCAGTGGAGGTCACGTGGTTGGACATTTAGCGCACAGGTCGCAGAAGAGCAAGAGCGAGCATGACTTGTTTGATGGTAAAAGTAAAGAGCAGAAAGCCATTGGGCATGGATGGAAGACTGAGTCCAGTCACATATTGACTCACAAAGCATGGATCGCAACTCCGTCTGAACGGCTGCTCGACAAGCTGCTGCACGCATCTTCTAGCCCTTTAGATGTGTTGTGCTCCAATCAAACCCCATACATACAGAGAAACGACCAAGCTCAAAATCATCTTTTACCTCTGAGAGTTCGAGAATCTGCTCTCACGCGCAACAGTCTTGCTCCCATCCGTGACCACTGCACTCACAGATTTTCCTTACCACCTGACCAGGTGTCCCAGGGAGTGAGGAAGTCCAAATCCTCTGTAGGAGTGGGTTTGGCTGTACTTCCACCTCCTTTTGCATCTAAACTGCACCGAGTCGGAGTTCCTCAAAGCCCGTCGCTCGGCTCCTTCCCGACTCCACTCACAGGAGAACCTTTACGAAACATTCAAGTTCTTCCTGCCATTCCTCCTCAGAGAAAACGCAGCCCTTCTCCCCTCACAACCCTGAaatccaacaaataa

Function

GO:

id name namespace
GO:0031018 endocrine pancreas development biological_process
GO:0042593 glucose homeostasis biological_process
GO:0003323 type B pancreatic cell development biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-080104-7 Acts upstream of or within glucose homeostasis and type B pancreatic cell development. Orthologous to human ANKRD55 (ankyrin repeat domain 55).

Ensembl:

ensembl_id ENSDART00000192773

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005989 lncRNA downstream 33608 5788620 ~ 5790151 (-) False XLOC_002550
TCONS_00004744 lncRNA downstream 296395 5525393 ~ 5527364 (-) True XLOC_002547
TCONS_00005988 lncRNA downstream 599817 5221915 ~ 5223942 (-) True XLOC_002546
TCONS_00005987 lncRNA downstream 601340 5221915 ~ 5222419 (-) False XLOC_002546
TCONS_00004741 lncRNA downstream 764936 5052862 ~ 5058823 (-) True XLOC_002544
TCONS_00005990 lncRNA upstream 6979 5854634 ~ 5855125 (-) True XLOC_002552
TCONS_00005991 lncRNA upstream 189226 6036881 ~ 6037746 (-) True XLOC_002555
TCONS_00005992 lncRNA upstream 541614 6389269 ~ 6409797 (-) True XLOC_002556
TCONS_00004764 lncRNA upstream 725283 6572938 ~ 6577465 (-) True XLOC_002560
TCONS_00005993 lncRNA upstream 762502 6610157 ~ 6611065 (-) True XLOC_002561
TCONS_00004749 mRNA downstream 2175 5788620 ~ 5821584 (-) False XLOC_002550
TCONS_00004750 mRNA downstream 9658 5794252 ~ 5814101 (-) True XLOC_002550
TCONS_00004748 mRNA downstream 139433 5667401 ~ 5684326 (-) True XLOC_002549
TCONS_00004746 mRNA downstream 242272 5536132 ~ 5581487 (-) False XLOC_002548
TCONS_00004745 mRNA downstream 255380 5533843 ~ 5568379 (-) False XLOC_002548
TCONS_00004754 mRNA upstream 4704 5852359 ~ 5854862 (-) False XLOC_002552
TCONS_00004755 mRNA upstream 7604 5855259 ~ 5857548 (-) True XLOC_002553
TCONS_00004757 mRNA upstream 569701 6417356 ~ 6427362 (-) False XLOC_002557
TCONS_00004758 mRNA upstream 569701 6417356 ~ 6454386 (-) False XLOC_002557
TCONS_00004761 mRNA upstream 625437 6473092 ~ 6494070 (-) True XLOC_002559
TCONS_00004738 other downstream 799474 5020277 ~ 5024285 (-) True XLOC_002543
TCONS_00004737 other downstream 801345 5020186 ~ 5022414 (-) False XLOC_002543
TCONS_00004736 other downstream 803259 5018558 ~ 5020500 (-) False XLOC_002543
TCONS_00004723 other downstream 2054993 3768651 ~ 3768766 (-) True XLOC_002530
TCONS_00004722 other downstream 2317105 3506540 ~ 3506654 (-) True XLOC_002529
TCONS_00004756 other upstream 102808 5950463 ~ 5950578 (-) True XLOC_002554
TCONS_00004759 other upstream 570050 6417705 ~ 6431288 (-) True XLOC_002557
TCONS_00004760 other upstream 625051 6472706 ~ 6472832 (-) True XLOC_002558
TCONS_00004765 other upstream 763420 6611075 ~ 6638235 (-) False XLOC_002562
TCONS_00004766 other upstream 774914 6622569 ~ 6623404 (-) False XLOC_002562

Expression Profile

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