RNA id: TCONS_00050187


Basic Information

Item Value
RNA id TCONS_00050187
length 602
RNA type nonsense_mediated_decay
GC content 0.49
exon number 5
gene id XLOC_025451
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 31600593 ~ 31605331 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAACAAATCGCCGGGGAGTTTGAAAACTGGCTGAATGAGCGGCTGGACTCGCTTGAAGTTGACCGAGAAGTTTACGGAGCTTATATACTTGGGGTGCTTCAGGAGGAGGAGAGCGATGAAGAGCAAAAGGACGCTCTTCAAGGCATTCTGTCCGCTTTTCTGgaagAAGAGACGCTTGAGGAGGTTTGCCAAGAGATCTTGAAACAGTGGACAGAGTGCTGTAGCAGATCTGCAGCAAAGAGCGATCAGGCGGATGtgctttgctttgttttgttttaagctgAAGTTCAGGCCATTGCTAGTCTGATAGAGAAGCAGGCACAGATTGTGGTCAAACAGAAGGAGGTGTCAGAAGATGCCAAGAAGAGGAAAGAGGCTGTTCTTGCTCAATATGCCAATGTCACAGACGACGAAGATGAAGCTGAAGAGGAGGAGCAAGTCCCAGTGGGGATACCCAGTGACAAATCCCTGTTCAAAAACACCAATGTGGAGGATGTTTTGAATCGCCGCAAACTGCAGCGTGACCAGGCCAAGGAAGATGCACAGAAGAAGAAAGAGCAGGACAAGATGCAACGTGAAAAAGACAAACTGTCCAAGCAGGA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1587 Orthologous to human CCDC43 (coiled-coil domain containing 43).

Ensembl:

ensembl_id ENSDART00000145148

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052715 lncRNA upstream 361085 31231809 ~ 31239563 (+) False XLOC_025449
TCONS_00052716 lncRNA upstream 361085 31232133 ~ 31239563 (+) True XLOC_025449
TCONS_00052714 lncRNA upstream 429774 31169219 ~ 31170874 (+) True XLOC_025447
TCONS_00050181 lncRNA upstream 494995 31097933 ~ 31105653 (+) False XLOC_025446
TCONS_00052713 lncRNA upstream 494995 31098188 ~ 31105653 (+) True XLOC_025446
TCONS_00050190 lncRNA downstream 58541 31662245 ~ 31668846 (+) False XLOC_025453
TCONS_00050192 lncRNA downstream 113557 31717261 ~ 31720005 (+) False XLOC_025454
TCONS_00052717 lncRNA downstream 314458 31918162 ~ 31919131 (+) True XLOC_025458
TCONS_00052718 lncRNA downstream 495995 32099699 ~ 32100639 (+) False XLOC_025464
TCONS_00050208 lncRNA downstream 495995 32099699 ~ 32100639 (+) False XLOC_025464
TCONS_00050183 mRNA upstream 170159 31396149 ~ 31430489 (+) False XLOC_025450
TCONS_00050184 mRNA upstream 170159 31396254 ~ 31430489 (+) True XLOC_025450
TCONS_00050182 mRNA upstream 412517 31177972 ~ 31188131 (+) True XLOC_025448
TCONS_00050180 mRNA upstream 503118 31093455 ~ 31097530 (+) True XLOC_025445
TCONS_00050179 mRNA upstream 510087 31087509 ~ 31090561 (+) True XLOC_025444
TCONS_00050188 mRNA downstream 18070 31621774 ~ 31624213 (+) True XLOC_025452
TCONS_00050189 mRNA downstream 58422 31662126 ~ 31699298 (+) False XLOC_025453
TCONS_00050191 mRNA downstream 76888 31680592 ~ 31686858 (+) True XLOC_025453
TCONS_00050193 mRNA downstream 113587 31717291 ~ 31726949 (+) True XLOC_025454
TCONS_00050195 mRNA downstream 247300 31851004 ~ 31870003 (+) True XLOC_025456
TCONS_00050170 other upstream 905776 30694783 ~ 30694872 (+) True XLOC_025435
TCONS_00050160 other upstream 1351612 30248739 ~ 30249036 (+) True XLOC_025429
TCONS_00050148 other upstream 1945723 29654160 ~ 29654925 (+) True XLOC_025418
TCONS_00050146 other upstream 1945727 29642200 ~ 29654921 (+) False XLOC_025418
TCONS_00050143 other upstream 1945951 29640994 ~ 29654697 (+) False XLOC_025418
TCONS_00050194 other downstream 184817 31788521 ~ 31788637 (+) True XLOC_025455
TCONS_00050246 other downstream 928892 32532596 ~ 32535126 (+) False XLOC_025485
TCONS_00050254 other downstream 967605 32571309 ~ 32571371 (+) True XLOC_025487
TCONS_00050265 other downstream 1058287 32661991 ~ 32663746 (+) False XLOC_025493
TCONS_00050268 other downstream 1067486 32671190 ~ 32671963 (+) False XLOC_025494

Expression Profile

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