RNA id: TCONS_00050190


Basic Information

Item Value
RNA id TCONS_00050190
length 410
lncRNA type retained_intron
GC content 0.43
exon number 2
gene id XLOC_025453
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 31662126 ~ 31699298 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGAAAACACAAGCCATCAGAGAACAACGCAGGGAAATGACTGGGATTTTATGAAGCGGGTGTAAAACTGAAAGAAGAAATGAGCACTGCTGATGGAAAGACACGCTTTGTGTCCACTTTAAGGATACAATTGTCTGGCTTCCAGCCAAATGGACAGGGGTCTCGACCAGTCATAAAAAAGCCTGAAGACACATCAAGTGCAGGCAATGAATGGCAATTACAACCACACAAGGCAACTGGATCCACCTCTTTTCACCAAGCCCCTCGAGGACTGTATAGTAGATGAAGGAAATGACATCACATTGAACGGAAGTATCACTGGGAGCCAGCCAATCAGCATTTCCTGGCTTCATAATGGTGAGCCCTGTtgttattacttttaaaaatgttcataatacTTATTTTGCTAA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0005575 cellular_component cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0004687 myosin light chain kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050309-74 Predicted to enable myosin light chain kinase activity. Predicted to act upstream of or within protein phosphorylation. Is expressed in eye.

Ensembl:

ensembl_id ENSDART00000165087

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052715 lncRNA upstream 422682 31231809 ~ 31239563 (+) False XLOC_025449
TCONS_00052716 lncRNA upstream 422682 31232133 ~ 31239563 (+) True XLOC_025449
TCONS_00052714 lncRNA upstream 491371 31169219 ~ 31170874 (+) True XLOC_025447
TCONS_00050181 lncRNA upstream 556592 31097933 ~ 31105653 (+) False XLOC_025446
TCONS_00052713 lncRNA upstream 556592 31098188 ~ 31105653 (+) True XLOC_025446
TCONS_00050192 lncRNA downstream 48415 31717261 ~ 31720005 (+) False XLOC_025454
TCONS_00052717 lncRNA downstream 249316 31918162 ~ 31919131 (+) True XLOC_025458
TCONS_00052718 lncRNA downstream 430853 32099699 ~ 32100639 (+) False XLOC_025464
TCONS_00050208 lncRNA downstream 430853 32099699 ~ 32100639 (+) False XLOC_025464
TCONS_00050209 lncRNA downstream 430855 32099701 ~ 32100623 (+) True XLOC_025464
TCONS_00050188 mRNA upstream 38032 31621774 ~ 31624213 (+) True XLOC_025452
TCONS_00050185 mRNA upstream 56914 31600593 ~ 31605331 (+) False XLOC_025451
TCONS_00050186 mRNA upstream 59023 31600617 ~ 31603222 (+) False XLOC_025451
TCONS_00050183 mRNA upstream 231756 31396149 ~ 31430489 (+) False XLOC_025450
TCONS_00050184 mRNA upstream 231756 31396254 ~ 31430489 (+) True XLOC_025450
TCONS_00050191 mRNA downstream 11746 31680592 ~ 31686858 (+) True XLOC_025453
TCONS_00050193 mRNA downstream 48445 31717291 ~ 31726949 (+) True XLOC_025454
TCONS_00050195 mRNA downstream 182158 31851004 ~ 31870003 (+) True XLOC_025456
TCONS_00050196 mRNA downstream 228183 31897029 ~ 31917390 (+) True XLOC_025457
TCONS_00050197 mRNA downstream 256221 31925067 ~ 31928639 (+) False XLOC_025459
TCONS_00050187 other upstream 58541 31600648 ~ 31603704 (+) True XLOC_025451
TCONS_00050170 other upstream 967373 30694783 ~ 30694872 (+) True XLOC_025435
TCONS_00050160 other upstream 1413209 30248739 ~ 30249036 (+) True XLOC_025429
TCONS_00050148 other upstream 2007320 29654160 ~ 29654925 (+) True XLOC_025418
TCONS_00050146 other upstream 2007324 29642200 ~ 29654921 (+) False XLOC_025418
TCONS_00050194 other downstream 119675 31788521 ~ 31788637 (+) True XLOC_025455
TCONS_00050246 other downstream 863750 32532596 ~ 32535126 (+) False XLOC_025485
TCONS_00050254 other downstream 902463 32571309 ~ 32571371 (+) True XLOC_025487
TCONS_00050265 other downstream 993145 32661991 ~ 32663746 (+) False XLOC_025493
TCONS_00050268 other downstream 1002344 32671190 ~ 32671963 (+) False XLOC_025494

Expression Profile

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