RNA id: TCONS_00050192


Basic Information

Item Value
RNA id TCONS_00050192
length 1040
lncRNA type retained_intron
GC content 0.44
exon number 2
gene id XLOC_025454
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 31717261 ~ 31726949 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTTCTATccgggacttttattttgaaacgcAGACACACATCTTTCAGACCAAATGCGCCGTTGAGCGGTAGGGCCTATTTAGGGCTTTCTAAAGTTAGAATTAAAACCGTCGGGACTAAGGAAAAACATGGCCCTTTAGCTACACGCAGTTATGAATGTTTGATGGTTATTTGCGTGTTTTATTAGGCAGGAATCGTGCTGTTTTGTAGGCAGCTCGTCGTTTTCGCGGCCGTTGCGGAGAGGGATTGTTATGACGTTCTCTTTGTCTCGCGCTGCACAAACCCGAGACCATATTTATCTCTGTAAGAGCCTTTTTTAAACATCCCGTCGAATCAAGCTACTCCTAACGACCTAATTCTCTCTAGCTGTCGCCGATCACTGGGATTGAAGCATGTCGTTGCACGGTAAACGAAAAGAGATCTACAAATACGAGGCGCCATGGACCGTCTATGCTATGAACTGGAGCGTCAGACCCGACAAGCGCTTTCGGCTCGCGCTCGGCAGCTTCGTCGAGGAGTACAACAACAAGGTCCAGCTGGTTGGTCTTGAGGAGGAGAGCTCAGAGTTTGTATGCAGAAACACTTTTGATCATCCGTACCCCACCACCAAGATCATGTGGATCCCAGACACCAAAGGCGTCTATCCAGACCTACTGGCAACCAGTGGAGACTATCTGCGCATATGGAGGGTATGCAGGAGGAGCACGTGCACAGTTTCTGAAGTGCCCCTATTATGCAATATTAAAGTTTGCTCTTTTTGTTTTGGAGGTCTTCTATAATAAGTTCATCCTAGATCAAGAATACACCTGTCATGTCATAATATGCAAAGCAGTATTTTGTCTTACATGAAGCACCTGAATCAGTCTGTTCAAAGATTCAATCTCTCTAAACCCCTTCTTTCCAAGAGTCTACCTTGTTCTGATTAGTCAAATGGCTTATTCTGTTTACAACAGTGTACTTTTGAATTTAAATCATATATGACCATATCTGAATTTCAGCTCTTGTATACACACTGATAAAACAATAGTGTCAGTTCTACC

Function

GO:

id name namespace
GO:0051216 cartilage development biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0005515 protein binding molecular_function

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-030131-9511 Acts upstream of or within cartilage development and embryonic viscerocranium morphogenesis. Located in nucleus. Is expressed in forebrain; head; hindbrain; and somite. Orthologous to human DCAF7 (DDB1 and CUL4 associated factor 7).

Ensembl:

ensembl_id ENSDART00000135046

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00050190 lncRNA upstream 48415 31662245 ~ 31668846 (+) False XLOC_025453
TCONS_00052715 lncRNA upstream 477698 31231809 ~ 31239563 (+) False XLOC_025449
TCONS_00052716 lncRNA upstream 477698 31232133 ~ 31239563 (+) True XLOC_025449
TCONS_00052714 lncRNA upstream 546387 31169219 ~ 31170874 (+) True XLOC_025447
TCONS_00050181 lncRNA upstream 611608 31097933 ~ 31105653 (+) False XLOC_025446
TCONS_00052717 lncRNA downstream 198157 31918162 ~ 31919131 (+) True XLOC_025458
TCONS_00052718 lncRNA downstream 379694 32099699 ~ 32100639 (+) False XLOC_025464
TCONS_00050208 lncRNA downstream 379694 32099699 ~ 32100639 (+) False XLOC_025464
TCONS_00050209 lncRNA downstream 379696 32099701 ~ 32100623 (+) True XLOC_025464
TCONS_00050213 lncRNA downstream 398672 32118677 ~ 32120093 (+) False XLOC_025467
TCONS_00050189 mRNA upstream 17963 31662126 ~ 31699298 (+) False XLOC_025453
TCONS_00050191 mRNA upstream 30403 31680592 ~ 31686858 (+) True XLOC_025453
TCONS_00050188 mRNA upstream 93048 31621774 ~ 31624213 (+) True XLOC_025452
TCONS_00050185 mRNA upstream 111930 31600593 ~ 31605331 (+) False XLOC_025451
TCONS_00050186 mRNA upstream 114039 31600617 ~ 31603222 (+) False XLOC_025451
TCONS_00050195 mRNA downstream 130999 31851004 ~ 31870003 (+) True XLOC_025456
TCONS_00050196 mRNA downstream 177024 31897029 ~ 31917390 (+) True XLOC_025457
TCONS_00050197 mRNA downstream 205062 31925067 ~ 31928639 (+) False XLOC_025459
TCONS_00050198 mRNA downstream 205062 31925067 ~ 31933774 (+) True XLOC_025459
TCONS_00050199 mRNA downstream 213888 31933893 ~ 31944709 (+) False XLOC_025460
TCONS_00050187 other upstream 113557 31600648 ~ 31603704 (+) True XLOC_025451
TCONS_00050170 other upstream 1022389 30694783 ~ 30694872 (+) True XLOC_025435
TCONS_00050160 other upstream 1468225 30248739 ~ 30249036 (+) True XLOC_025429
TCONS_00050148 other upstream 2062336 29654160 ~ 29654925 (+) True XLOC_025418
TCONS_00050147 other upstream 2068103 29648122 ~ 29649158 (+) False XLOC_025418
TCONS_00050194 other downstream 68516 31788521 ~ 31788637 (+) True XLOC_025455
TCONS_00050246 other downstream 812591 32532596 ~ 32535126 (+) False XLOC_025485
TCONS_00050254 other downstream 851304 32571309 ~ 32571371 (+) True XLOC_025487
TCONS_00050265 other downstream 941986 32661991 ~ 32663746 (+) False XLOC_025493
TCONS_00050268 other downstream 951185 32671190 ~ 32671963 (+) False XLOC_025494

Expression Profile

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