RNA id: TCONS_00052717


Basic Information

Item Value
RNA id TCONS_00052717
length 804
lncRNA type antisense_over
GC content 0.31
exon number 2
gene id XLOC_025458
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 31918162 ~ 31919131 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACATTTCCTTCAAAAATGAAATCAAACCATAATGTTCACAGTGGCTTTATGTTGACTCTGTTCAATAATACACTTATTAGACTTACAACGAAGGCCaaatatagcaaaaaaataataattactatgtCAGCCCTTtatagtgttaaaaaaataaaactataatttaaCTTTACTTTTCCTCCCATCCAACGAGACTTACTTAAaaaggtagttcacccaaaaatgaaaattttgccCTTCACCCATCCTCTActtcagggatgtcaaactcaatccctgctctacTTGATTCAATACagcttgagtttcttttttctgttgaacacaaaagatatatCGATCGATGTTGTATACCTGtaatttccatagtatttgtttgtcctgctattgaaatcaatggttacagacttaaaatgttttcaaaatattgtctgttgtgttcaacagaaaaaaagaaactcatacaggtttgcaaccacttgaggatgagtaaatgctgACTACATTTTCAATgttagagaataaaaaaaaaagtacaatattgTCTTGAAAATGATccataaaaaacattaaagacaTCTTTACACATTACAATAATATAGATTTGCTTTGTGTGATATTAAATGACTCTAGTGAATGATGTGcaattctttttatttctttttaagtcATGTTAAGATTTccgacatttaaaaagatttctGACAAACCTGTCTACAAAAGACACGTTTATTtcaaatactttgaaaatgtacAACTCTGAATGTGAGTGATTAAAGTAGAAAAGAGAAGGGGAGGCTGTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00050192 lncRNA upstream 198157 31717261 ~ 31720005 (+) False XLOC_025454
TCONS_00050190 lncRNA upstream 249316 31662245 ~ 31668846 (+) False XLOC_025453
TCONS_00052715 lncRNA upstream 678599 31231809 ~ 31239563 (+) False XLOC_025449
TCONS_00052716 lncRNA upstream 678599 31232133 ~ 31239563 (+) True XLOC_025449
TCONS_00052714 lncRNA upstream 747288 31169219 ~ 31170874 (+) True XLOC_025447
TCONS_00052718 lncRNA downstream 180568 32099699 ~ 32100639 (+) False XLOC_025464
TCONS_00050208 lncRNA downstream 180568 32099699 ~ 32100639 (+) False XLOC_025464
TCONS_00050209 lncRNA downstream 180570 32099701 ~ 32100623 (+) True XLOC_025464
TCONS_00050213 lncRNA downstream 199546 32118677 ~ 32120093 (+) False XLOC_025467
TCONS_00052719 lncRNA downstream 374642 32293773 ~ 32297003 (+) True XLOC_025473
TCONS_00050196 mRNA upstream 772 31897029 ~ 31917390 (+) True XLOC_025457
TCONS_00050195 mRNA upstream 48159 31851004 ~ 31870003 (+) True XLOC_025456
TCONS_00050193 mRNA upstream 191213 31717291 ~ 31726949 (+) True XLOC_025454
TCONS_00050189 mRNA upstream 218864 31662126 ~ 31699298 (+) False XLOC_025453
TCONS_00050191 mRNA upstream 231304 31680592 ~ 31686858 (+) True XLOC_025453
TCONS_00050197 mRNA downstream 5936 31925067 ~ 31928639 (+) False XLOC_025459
TCONS_00050198 mRNA downstream 5936 31925067 ~ 31933774 (+) True XLOC_025459
TCONS_00050199 mRNA downstream 14762 31933893 ~ 31944709 (+) False XLOC_025460
TCONS_00050200 mRNA downstream 14764 31933895 ~ 31944709 (+) True XLOC_025460
TCONS_00050201 mRNA downstream 26473 31945604 ~ 31951295 (+) True XLOC_025461
TCONS_00050194 other upstream 129525 31788521 ~ 31788637 (+) True XLOC_025455
TCONS_00050187 other upstream 314458 31600648 ~ 31603704 (+) True XLOC_025451
TCONS_00050170 other upstream 1223290 30694783 ~ 30694872 (+) True XLOC_025435
TCONS_00050160 other upstream 1669126 30248739 ~ 30249036 (+) True XLOC_025429
TCONS_00050148 other upstream 2263237 29654160 ~ 29654925 (+) True XLOC_025418
TCONS_00050246 other downstream 613465 32532596 ~ 32535126 (+) False XLOC_025485
TCONS_00050254 other downstream 652178 32571309 ~ 32571371 (+) True XLOC_025487
TCONS_00050265 other downstream 742860 32661991 ~ 32663746 (+) False XLOC_025493
TCONS_00050268 other downstream 752059 32671190 ~ 32671963 (+) False XLOC_025494
TCONS_00050288 other downstream 923663 32842794 ~ 32848026 (+) False XLOC_025502

Expression Profile

//