RNA id: TCONS_00005990


Basic Information

Item Value
RNA id TCONS_00005990
length 492
lncRNA type sense_over
GC content 0.39
exon number 1
gene id XLOC_002552
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 5852359 ~ 5855125 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCTGAGTCCGAGTCCGAGTCCGAGTCAGAGTCAGTTCTTGAGGAGCCTAATGAGGCTTCTGGGCTGACTCTTGGTAAGTGATCAtttccttttattattataaattagtaaTCAGTTTACTCCTGCAATTCTGATGGAAGTTTCTGCTTTCAGCTCATTGCATTAGATCCAGATTTAAAGGATTCGAGTCATTTATTTGATCCGTTTCATACCAGACAATGCAAGTAAATCTCCCTgctgtttttctgtgtttcaggatcTAGGGTGGGTCTTTTTGAAGTGAAAGacctgattggagaaggaagttATGGCAAGGTGTATCTGGGATCTCACGTATTTAATGAGAGAACAAAGGTAGAGAACTATTTTTCAAATTCAGTCAACATTTTCCTCCTGATTACTCAATATAAATCATTTGTGggctttaatttcatttgttgttgtttttccgcAGGTTGCCCTGAAGTACATCAAGAAGCGTAAACAGGACCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005989 lncRNA downstream 64483 5788620 ~ 5790151 (-) False XLOC_002550
TCONS_00004744 lncRNA downstream 327270 5525393 ~ 5527364 (-) True XLOC_002547
TCONS_00005988 lncRNA downstream 630692 5221915 ~ 5223942 (-) True XLOC_002546
TCONS_00005987 lncRNA downstream 632215 5221915 ~ 5222419 (-) False XLOC_002546
TCONS_00004741 lncRNA downstream 795811 5052862 ~ 5058823 (-) True XLOC_002544
TCONS_00005991 lncRNA upstream 181756 6036881 ~ 6037746 (-) True XLOC_002555
TCONS_00005992 lncRNA upstream 534144 6389269 ~ 6409797 (-) True XLOC_002556
TCONS_00004764 lncRNA upstream 717813 6572938 ~ 6577465 (-) True XLOC_002560
TCONS_00005993 lncRNA upstream 755032 6610157 ~ 6611065 (-) True XLOC_002561
TCONS_00005994 lncRNA upstream 838389 6693514 ~ 6695332 (-) False XLOC_002565
TCONS_00004753 mRNA downstream 6730 5824335 ~ 5847904 (-) True XLOC_002551
TCONS_00004751 mRNA downstream 6979 5823759 ~ 5847655 (-) False XLOC_002551
TCONS_00004752 mRNA downstream 9719 5824288 ~ 5844915 (-) False XLOC_002551
TCONS_00004749 mRNA downstream 33050 5788620 ~ 5821584 (-) False XLOC_002550
TCONS_00004750 mRNA downstream 40533 5794252 ~ 5814101 (-) True XLOC_002550
TCONS_00004755 mRNA upstream 134 5855259 ~ 5857548 (-) True XLOC_002553
TCONS_00004757 mRNA upstream 562231 6417356 ~ 6427362 (-) False XLOC_002557
TCONS_00004758 mRNA upstream 562231 6417356 ~ 6454386 (-) False XLOC_002557
TCONS_00004761 mRNA upstream 617967 6473092 ~ 6494070 (-) True XLOC_002559
TCONS_00004762 mRNA upstream 666251 6521376 ~ 6588793 (-) False XLOC_002560
TCONS_00004738 other downstream 830349 5020277 ~ 5024285 (-) True XLOC_002543
TCONS_00004737 other downstream 832220 5020186 ~ 5022414 (-) False XLOC_002543
TCONS_00004736 other downstream 834134 5018558 ~ 5020500 (-) False XLOC_002543
TCONS_00004723 other downstream 2085868 3768651 ~ 3768766 (-) True XLOC_002530
TCONS_00004722 other downstream 2347980 3506540 ~ 3506654 (-) True XLOC_002529
TCONS_00004756 other upstream 95338 5950463 ~ 5950578 (-) True XLOC_002554
TCONS_00004759 other upstream 562580 6417705 ~ 6431288 (-) True XLOC_002557
TCONS_00004760 other upstream 617581 6472706 ~ 6472832 (-) True XLOC_002558
TCONS_00004765 other upstream 755950 6611075 ~ 6638235 (-) False XLOC_002562
TCONS_00004766 other upstream 767444 6622569 ~ 6623404 (-) False XLOC_002562