RNA id: TU1910621


Basic Information

Item Value
RNA id TU1910621
length 233
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G1669940
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 17222581 ~ 17222813 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atataatTCGGACTTGTtcaaggaaaaagcttcttccagttcgaggtgagtaatcgctgttctgatgtccagaagttattttcagacATAATAGACGGTACCAGCAACAATAAGTAAAAAAGGaagttacaaacacacacacaaaaaaaaaaatagcacagttggttaggagcatgtaaaatgtcagccatcctctccggcgcCATTCTACATCACATGCGCACTACGCACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1910620 lncRNA downstream 864 17221507 ~ 17221717 (-) True G1669939
TU1910619 lncRNA downstream 2857 17219457 ~ 17219724 (-) True G1669938
TU1910615 lncRNA downstream 13552 17208816 ~ 17209029 (-) True G1669934
TU1910610 lncRNA downstream 17929 17203004 ~ 17204652 (-) True G1669929
TU1910598 lncRNA downstream 25299 17196936 ~ 17197282 (-) True G1669925
TU1910624 lncRNA upstream 2718 17225531 ~ 17226389 (-) True G1669943
TU1910636 lncRNA upstream 30035 17252848 ~ 17254491 (-) False LOC110499077
TU1910637 lncRNA upstream 30035 17252848 ~ 17253563 (-) True LOC110499077
TU1910647 lncRNA upstream 32990 17255803 ~ 17256018 (-) True G1669964
TU1910678 lncRNA upstream 87163 17309976 ~ 17310644 (-) True G1669994
XM_021575945.2 mRNA downstream 409498 16805888 ~ 16813083 (-) True psme3
XM_021575942.2 mRNA downstream 433361 16784825 ~ 16789220 (-) True LOC110499065
XM_021576718.2 mRNA downstream 444308 16776151 ~ 16778273 (-) False LOC110499587
XM_021576719.2 mRNA downstream 444308 16776151 ~ 16778273 (-) True LOC110499587
XR_005037936.1 mRNA downstream 453727 16754233 ~ 16768854 (-) True LOC118942039
XM_021575961.2 mRNA upstream 17052 17239865 ~ 17253625 (-) False LOC110499077
XM_021575960.2 mRNA upstream 51637 17274450 ~ 17285270 (-) True LOC110499076
XM_036955911.1 mRNA upstream 123353 17346166 ~ 17350460 (-) True LOC118942041
XM_036955554.1 mRNA upstream 136841 17359654 ~ 17362598 (-) True LOC118942007
XM_021575963.2 mRNA upstream 144356 17367169 ~ 17374315 (-) True LOC110499078
TU1909961 other downstream 427326 16754026 ~ 16795255 (-) True G1669343
TU1909831 other downstream 673449 16547348 ~ 16549132 (-) True LOC110499060
TU1909325 other downstream 884847 16337276 ~ 16337734 (-) True G1668767
TU1908412 other downstream 1577656 15637145 ~ 15644925 (-) False LOC110498751
TU1908420 other downstream 1645890 15566558 ~ 15576691 (-) True LOC110498749
TU1910658 other upstream 46970 17269783 ~ 17270148 (-) True G1669974
TU1910760 other upstream 205802 17428615 ~ 17434040 (-) True LOC110498759
TU1910728 other upstream 219777 17442590 ~ 17452727 (-) True LOC110498760
TU1910809 other upstream 373802 17596615 ~ 17625448 (-) True G1670109
TU1910889 other upstream 463163 17685976 ~ 17691866 (-) True G1670145

Expression Profile