RNA id: TU1910658



Basic Information


Item Value
RNA id TU1910658
length 366
RNA type TUCP
GC content 0.44
exon number 1
gene id G1669974
representative True

Chromosome Information


Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 17269783 ~ 17270148 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtccgtccctctaaactttcagctcatacaaggagaagactgatcagagatgcagccaagaggcccatgatcactctggatgaactgcagagatctacagctgaggtgggagactctgtccataggacaacaatcagtcgtatattgcgcaaatctggcctttatggaagagtggcaagaagaaagccatttcttaaagatatccataaaaagtgtcgtttaaagtttgccacaagccacctgggagacacaccaaacatgtggaagaaggtgctcaggtcagatgaaaccaaaattgaactttttggcaacaatgcaaaacattatgtttggcgtaaaagcaacacagctcatcaccctgaacac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1910647 lncRNA downstream 13765 17255803 ~ 17256018 (-) True G1669964
TU1910636 lncRNA downstream 15292 17252848 ~ 17254491 (-) False LOC110499077
TU1910637 lncRNA downstream 16220 17252848 ~ 17253563 (-) True LOC110499077
TU1910624 lncRNA downstream 43394 17225531 ~ 17226389 (-) True G1669943
TU1910621 lncRNA downstream 46970 17222581 ~ 17222813 (-) True G1669940
TU1910678 lncRNA upstream 39828 17309976 ~ 17310644 (-) True G1669994
TU1910681 lncRNA upstream 44125 17314273 ~ 17314488 (-) True G1669997
TU1910683 lncRNA upstream 47557 17317705 ~ 17318004 (-) True G1669999
TU1910729 lncRNA upstream 179293 17449441 ~ 17451269 (-) True G1670038
TU1910730 lncRNA upstream 182889 17453037 ~ 17453253 (-) True G1670039
XM_021575961.2 mRNA downstream 16158 17239865 ~ 17253625 (-) False LOC110499077
XM_021575945.2 mRNA downstream 456700 16805888 ~ 16813083 (-) True psme3
XM_021575942.2 mRNA downstream 480563 16784825 ~ 16789220 (-) True LOC110499065
XM_021576718.2 mRNA downstream 491510 16776151 ~ 16778273 (-) False LOC110499587
XM_021576719.2 mRNA downstream 491510 16776151 ~ 16778273 (-) True LOC110499587
XM_021575960.2 mRNA upstream 4302 17274450 ~ 17285270 (-) True LOC110499076
XM_036955911.1 mRNA upstream 76018 17346166 ~ 17350460 (-) True LOC118942041
XM_036955554.1 mRNA upstream 89506 17359654 ~ 17362598 (-) True LOC118942007
XM_021575963.2 mRNA upstream 97021 17367169 ~ 17374315 (-) True LOC110499078
LOC110498759 mRNA upstream 158538 17428686 ~ 17431056 (-) False LOC110498759
TU1909961 other downstream 474528 16754026 ~ 16795255 (-) True G1669343
TU1909831 other downstream 720651 16547348 ~ 16549132 (-) True LOC110499060
TU1909325 other downstream 932049 16337276 ~ 16337734 (-) True G1668767
TU1908412 other downstream 1624858 15637145 ~ 15644925 (-) False LOC110498751
TU1908420 other downstream 1693092 15566558 ~ 15576691 (-) True LOC110498749
TU1910760 other upstream 158467 17428615 ~ 17434040 (-) True LOC110498759
TU1910728 other upstream 172442 17442590 ~ 17452727 (-) True LOC110498760
TU1910809 other upstream 326467 17596615 ~ 17625448 (-) True G1670109
TU1910889 other upstream 415828 17685976 ~ 17691866 (-) True G1670145
TU1910885 other upstream 417587 17687735 ~ 17694584 (-) True G1670142

Expression Profile