RNA id: TU1910780


Basic Information

Item Value
RNA id TU1910780
length 272
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G1670088
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 17571382 ~ 17571653 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCGATAGATTTGCTGGAccatattcatggtttcctcatgcGTGAAGGTGGTGGAATTAGAGAATTAAGGCATGGTCAGAATACGTCTTTTCATTAGACATCTCTGCCACACATGAATTTATTCAATCTCCTCCCAAAATGATTAGCAggcgaatagcatgctattcatgcTTAAATTCGTCACAATAGGCATGGAGAGAAGTGCATAGAAAGGGAATTGCGTTCCAAATACGCATGCTTAACTTGAGCCGGAATCAGGCAcagtgtcccag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1910777 lncRNA upstream 9700 17557055 ~ 17561682 (+) True G1670086
TU1910776 lncRNA upstream 28914 17542213 ~ 17542468 (+) True G1670085
TU1910312 lncRNA upstream 184462 17328520 ~ 17386920 (+) True G1669683
TU1910396 lncRNA upstream 203695 17359796 ~ 17367687 (+) True G1669755
TU1910371 lncRNA upstream 253443 17317734 ~ 17317939 (+) True LOC118942006
TU1910787 lncRNA downstream 9000 17580653 ~ 17605720 (+) False G1670094
TU1910786 lncRNA downstream 12518 17584171 ~ 17605720 (+) True G1670094
TU1910788 lncRNA downstream 35628 17607281 ~ 17614739 (+) True LOC118942045
TU1910818 lncRNA downstream 114271 17685924 ~ 17691465 (+) True G1670114
TU1910822 lncRNA downstream 116384 17688037 ~ 17693706 (+) True G1670116
LOC118942042 mRNA upstream 75641 17484324 ~ 17495741 (+) True LOC118942042
LOC118941996 mRNA upstream 91451 17476413 ~ 17479931 (+) True LOC118941996
LOC110515779 mRNA upstream 98495 17469369 ~ 17472887 (+) True LOC110515779
LOC118942008 mRNA upstream 106401 17461437 ~ 17464981 (+) True LOC118942008
LOC118941995 mRNA upstream 114339 17453529 ~ 17457043 (+) False LOC118941995
XR_005037941.1 mRNA downstream 8937 17580590 ~ 17587187 (+) True LOC118942043
XR_005037942.1 mRNA downstream 28476 17600129 ~ 17605166 (+) True LOC118942044
XR_005037943.1 mRNA downstream 38760 17610413 ~ 17615450 (+) False LOC118942045
XR_005037944.1 mRNA downstream 266440 17838093 ~ 17843090 (+) True LOC118942046
XR_005037951.1 mRNA downstream 1523229 19094882 ~ 19185972 (+) False LOC110499153
TU1910465 other upstream 117288 17453487 ~ 17454094 (+) True LOC118941995
TU1909427 other upstream 885287 16658274 ~ 16686095 (+) False LOC110498756
TU1909447 other upstream 1030945 16535724 ~ 16540437 (+) True LOC110498755
TU1908875 other upstream 1265161 16141278 ~ 16306221 (+) False LOC110499058
TU1910783 other downstream 1178 17572831 ~ 17577262 (+) True G1670091
TU1910833 other downstream 145383 17717036 ~ 17740543 (+) False G1670125
TU1910846 other downstream 145383 17717036 ~ 17779374 (+) False G1670125
TU1910852 other downstream 180641 17752294 ~ 17760812 (+) True G1670129
TU1910848 other downstream 195828 17767481 ~ 17773702 (+) True G1670126

Expression Profile