RNA id: TU1910818


Basic Information

Item Value
RNA id TU1910818
length 381
lncRNA type inter_gene
GC content 0.55
exon number 2
gene id G1670114
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 17685924 ~ 17691465 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgtactgacctcgccttctggatgatagcggggtgaacaggcagtggctcgggtggttgatgtccttgatgatctttatggccttcctgtgacatcgggtggtgtaggtgtcctggagggcaggtagtttgcccccggtgatgcgttgtgcagacctcactaccctctggagagccttacggttgagggcggtgcagttgccataccaggcggtgatacagcctgccaggatgctctcgattgtgcatctgtagaagtttgtgagtgcttttggtgacaagccgaatttcttcagcctcctgaggttgaagaggcgctgctgcgccttcttcacgatgctgtctgtgtgagcggaccaattcagtttgtctgtgatgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1910788 lncRNA upstream 71185 17607281 ~ 17614739 (+) True LOC118942045
TU1910787 lncRNA upstream 80204 17580653 ~ 17605720 (+) False G1670094
TU1910786 lncRNA upstream 80204 17584171 ~ 17605720 (+) True G1670094
TU1910780 lncRNA upstream 114271 17571382 ~ 17571653 (+) True G1670088
TU1910777 lncRNA upstream 124242 17557055 ~ 17561682 (+) True G1670086
TU1910831 lncRNA downstream 23083 17714548 ~ 17714916 (+) True G1670123
TU1910834 lncRNA downstream 25571 17717036 ~ 17740543 (+) False G1670125
TU1910850 lncRNA downstream 34305 17725770 ~ 17734028 (+) True G1670128
TU1910837 lncRNA downstream 44154 17735619 ~ 17740543 (+) False G1670125
TU1910844 lncRNA downstream 47675 17739140 ~ 17740543 (+) False G1670125
XR_005037943.1 mRNA upstream 70474 17610413 ~ 17615450 (+) False LOC118942045
XR_005037942.1 mRNA upstream 80758 17600129 ~ 17605166 (+) True LOC118942044
XR_005037941.1 mRNA upstream 98737 17580590 ~ 17587187 (+) True LOC118942043
LOC118942042 mRNA upstream 190183 17484324 ~ 17495741 (+) True LOC118942042
LOC118941996 mRNA upstream 205993 17476413 ~ 17479931 (+) True LOC118941996
XR_005037944.1 mRNA downstream 146628 17838093 ~ 17843090 (+) True LOC118942046
XR_005037951.1 mRNA downstream 1403417 19094882 ~ 19185972 (+) False LOC110499153
XM_021576100.2 mRNA downstream 1403417 19094882 ~ 19201695 (+) False LOC110499153
XM_021576096.2 mRNA downstream 1515787 19207252 ~ 19242695 (+) True LOC110499151
XM_021576095.2 mRNA downstream 1603658 19295123 ~ 19303669 (+) True LOC110499149
TU1910783 other upstream 108662 17572831 ~ 17577262 (+) True G1670091
TU1910465 other upstream 231830 17453487 ~ 17454094 (+) True LOC118941995
TU1909427 other upstream 999829 16658274 ~ 16686095 (+) False LOC110498756
TU1909447 other upstream 1145487 16535724 ~ 16540437 (+) True LOC110498755
TU1908878 other upstream 1529639 16141278 ~ 16156285 (+) True LOC110499058
TU1910833 other downstream 25571 17717036 ~ 17740543 (+) False G1670125
TU1910846 other downstream 25571 17717036 ~ 17779374 (+) False G1670125
TU1910852 other downstream 60829 17752294 ~ 17760812 (+) True G1670129
TU1910848 other downstream 76016 17767481 ~ 17773702 (+) True G1670126
TU1910974 other downstream 360146 18051611 ~ 18121167 (+) False G1670209

Expression Profile