RNA id: TU1910974


Basic Information

Item Value
RNA id TU1910974
length 1923
RNA type TUCP
GC content 0.55
exon number 10
gene id G1670209
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 18051611 ~ 18132470 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atagggaaacagtgcgctgcagagccaccagagaagatggctagcagcccagagaagagttccacagcacaggagctgaaggagcagggcaaccaactgttcctctgccgcaagtaccaggaagctgccacctgctacagcaaaaccataaaccgtaacccctcagtggcggtgtactacaccaaccgtactctgtgccaagtgaagctgcaagcagaacgacaaagccctggcggactgcaagcacgcgctggaactggacccccattctgtcaaagcccacttcttcctgtgccagtgtcacctggagctggagaactacaacgaggccatcggcaacctgcagagagcttacaatctggtcaaggagcagagactgaactttggagacgacatcccgagtgccctgcgggtcactaagaagaagcgctggaatagcattgaggagaagcgcatcaaccaggagaacaagctgcatgcatatctcaccaaacttatcctagcagagaaggagagtttgtgagaagacaaagaacagggccattctttcacctgacagctagccagccggagagacggggaacaggatagggaaacagtgcgcagcgggcgctgcagagccaccagagaagatggctagcagcccagagaagagttccacagcacaggagctgaaggagcagggcaaccgactgttcctctgccgcaagtaccaggaagctgccacctgctacagcaaaaccataaaccgtaacccctcagtggcggtgtactacaccaaccgtactctgtgccaagtgaagctgcaagcagaacgacaaagccctggcggactgcaagcacgcgctggaactggacccccattctgtcaaagcccacttcttcctgtgccagtgtcacctggagctggagaactacaacgaggccatcggcaacctgcagagagcttacaatctggtcaaggagcagagactgaactttggagacgacatcccgagtgccctgcgggtcactaagaagaagcgctggaatagcattgaggagaagcgcatcaaccaggagaacaagctgcatgcatatctcaccaaacttatcctagcagagaaggagagtttgtgagaagacaaagaacagggccattctttcacctgacagctagccagccggagagacggggaacaggatagggaaacagtgcgcagcgggcgctgcagagccaccagagaagatggctagcagcccagagaagagttccacagcacaggagctgaaggagcagggcaaccgactgttcctctgccgcaagtaccaggaagctgccacctgctacagcaaaaccataaaccgtaacccctcagtggcggtgtactacaccaaccgtactctgtgccaagtgaagctgcaagcagaacgacaaagccctggcggactgcaagcacgcgctggaactggacctccattctgtcaaagcccacttcttcctgtgccagtgtcacctggagctggagaactacaacgaggccatcggcaacctgcagagagcttacaatctggtcaaggagcagagactgaactttggagacgacatcccgagtgccctgcgggtcgctaagaagaagcgctggaatagcattgaggagaagcgcatcaaccaggagaacaagctgcatgcatatctcaccaaacttatcctagcagagaaggagagtttgtgagaagacaaagaacagggccattctttcacctgacagctagccagccggagagacggggaagaggatagggaaacagtgcgcagcgggcgctgcagagccaccagagaagatggctagcagcccagagaagagttccacagcacaggagctgaaggagcagggcaaccgactgttcctctgccgcaagtaccaggaagctgccacctgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1910969 lncRNA upstream 992 18050062 ~ 18050619 (+) True G1670208
TU1910926 lncRNA upstream 45152 18006245 ~ 18006459 (+) True G1670174
TU1910907 lncRNA upstream 218560 17828766 ~ 17833051 (+) True G1670159
TU1910906 lncRNA upstream 235119 17816179 ~ 17816492 (+) True G1670158
TU1910845 lncRNA upstream 238904 17762315 ~ 17812707 (+) True G1670125
TU1911009 lncRNA downstream 42617 18163784 ~ 18223302 (+) True G1670233
TU1911004 lncRNA downstream 72329 18193496 ~ 18194669 (+) False G1670231
TU1911003 lncRNA downstream 73237 18194404 ~ 18200773 (+) True G1670231
TU1911011 lncRNA downstream 74142 18195309 ~ 18200160 (+) True G1670235
TU1911000 lncRNA downstream 74968 18196135 ~ 18202995 (+) True G1670229
XR_005037944.1 mRNA upstream 208521 17838093 ~ 17843090 (+) True LOC118942046
XR_005037943.1 mRNA upstream 436161 17610413 ~ 17615450 (+) False LOC118942045
XR_005037942.1 mRNA upstream 446445 17600129 ~ 17605166 (+) True LOC118942044
XR_005037941.1 mRNA upstream 464424 17580590 ~ 17587187 (+) True LOC118942043
LOC118942042 mRNA upstream 555870 17484324 ~ 17495741 (+) True LOC118942042
XR_005037951.1 mRNA downstream 973715 19094882 ~ 19185972 (+) False LOC110499153
XM_021576100.2 mRNA downstream 973715 19094882 ~ 19201695 (+) False LOC110499153
XM_021576096.2 mRNA downstream 1086085 19207252 ~ 19242695 (+) True LOC110499151
XM_021576095.2 mRNA downstream 1173956 19295123 ~ 19303669 (+) True LOC110499149
XM_021576087.2 mRNA downstream 1190203 19311370 ~ 19350990 (+) False LOC110499145
TU1910846 other upstream 272237 17717036 ~ 17779374 (+) False G1670125
TU1910848 other upstream 277909 17767481 ~ 17773702 (+) True G1670126
TU1910852 other upstream 290799 17752294 ~ 17760812 (+) True G1670129
TU1910833 other upstream 311068 17717036 ~ 17740543 (+) False G1670125
TU1910783 other upstream 474349 17572831 ~ 17577262 (+) True G1670091
TU1911253 other downstream 973877 19095044 ~ 19125236 (+) False LOC110499153
TU1911957 other downstream 2106628 20227795 ~ 20228168 (+) True G1671091
TU1914009 other downstream 2968236 21089403 ~ 21089830 (+) True G1672918
TU1914069 other downstream 3019358 21140525 ~ 21191078 (+) True G1672973
TU1914145 other downstream 3175205 21296372 ~ 21296854 (+) True G1673044

Expression Profile