RNA id: TU1910970


Basic Information

Item Value
RNA id TU1910970
length 478
lncRNA type inter_gene
GC content 0.55
exon number 3
gene id G1670209
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 18051611 ~ 18132470 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actggacctccattctgtcaaagcccacttcttcctgtgccagtgtcacctggagctggagaactacaacgaggccatcggcaacctgcagagagcttacaatctggtcaaggagcagagactgaactttggagacgacatcccgagtgccctgcgggtcgctaagaagaagcgctggaatagcattgaggagaagcgcatcaaccaggagaacaagctgcatgcatatctcaccaaacttatcctagcagagaaggagagtttgtgagaagacaaagaacagggccattctttcacctgacagctagccagccggagagacggggaagaggatagggaaacagtgcgcagcgggcgctgcagagccaccagagaagatggctagcagcccagagaagagttccacagcacaggagctgaaggagcagggcaaccgactgttcctctgccgcaagtaccaggaagctgccacctgcta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1910969 lncRNA upstream 24481 18050062 ~ 18050619 (+) True G1670208
TU1910926 lncRNA upstream 68641 18006245 ~ 18006459 (+) True G1670174
TU1910907 lncRNA upstream 242049 17828766 ~ 17833051 (+) True G1670159
TU1910906 lncRNA upstream 258608 17816179 ~ 17816492 (+) True G1670158
TU1910845 lncRNA upstream 262393 17762315 ~ 17812707 (+) True G1670125
TU1911009 lncRNA downstream 31314 18163784 ~ 18223302 (+) True G1670233
TU1911004 lncRNA downstream 61026 18193496 ~ 18194669 (+) False G1670231
TU1911003 lncRNA downstream 61934 18194404 ~ 18200773 (+) True G1670231
TU1911011 lncRNA downstream 62839 18195309 ~ 18200160 (+) True G1670235
TU1911000 lncRNA downstream 63665 18196135 ~ 18202995 (+) True G1670229
XR_005037944.1 mRNA upstream 232010 17838093 ~ 17843090 (+) True LOC118942046
XR_005037943.1 mRNA upstream 459650 17610413 ~ 17615450 (+) False LOC118942045
XR_005037942.1 mRNA upstream 469934 17600129 ~ 17605166 (+) True LOC118942044
XR_005037941.1 mRNA upstream 487913 17580590 ~ 17587187 (+) True LOC118942043
LOC118942042 mRNA upstream 579359 17484324 ~ 17495741 (+) True LOC118942042
XR_005037951.1 mRNA downstream 962412 19094882 ~ 19185972 (+) False LOC110499153
XM_021576100.2 mRNA downstream 962412 19094882 ~ 19201695 (+) False LOC110499153
XM_021576096.2 mRNA downstream 1074782 19207252 ~ 19242695 (+) True LOC110499151
XM_021576095.2 mRNA downstream 1162653 19295123 ~ 19303669 (+) True LOC110499149
XM_021576087.2 mRNA downstream 1178900 19311370 ~ 19350990 (+) False LOC110499145
TU1910846 other upstream 295726 17717036 ~ 17779374 (+) False G1670125
TU1910848 other upstream 301398 17767481 ~ 17773702 (+) True G1670126
TU1910852 other upstream 314288 17752294 ~ 17760812 (+) True G1670129
TU1910833 other upstream 334557 17717036 ~ 17740543 (+) False G1670125
TU1910783 other upstream 497838 17572831 ~ 17577262 (+) True G1670091
TU1911253 other downstream 962574 19095044 ~ 19125236 (+) False LOC110499153
TU1911957 other downstream 2095325 20227795 ~ 20228168 (+) True G1671091
TU1914009 other downstream 2956933 21089403 ~ 21089830 (+) True G1672918
TU1914069 other downstream 3008055 21140525 ~ 21191078 (+) True G1672973
TU1914145 other downstream 3163902 21296372 ~ 21296854 (+) True G1673044

Expression Profile