RNA id: TU1912385


Basic Information

Item Value
RNA id TU1912385
length 1676
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G1671489
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 18118813 ~ 18137519 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttaggtacatgttatatttaaagggagaattagctctggaagccatctaaacgtgaatcgattctcagttgcagtaacgttacggttcttgaaataaatccctctaggttcatttcacatcaaaataatttcactaatgaaaaaaaatacacacctactgtacacggtcttaaccggttaacacagaacagtatttttcagtaacaacacgtttgtggcgtctgtcttcacacagcaggcgtattcggagaaacagattgctaattagctcaggtagtccactctgtcttccgtaaataagcgctgtgagatggaaatatggtcgtgtgggaaccccagccctataaagctgtgtatcaatttaaattttagttttttgaaaatgggttatcacggatatgaaagataaggtcattacgcctccaaaaacatatcgctagcgaagcttgtatgtctaatgtaacgttatctcatgatgacaaagtcaagcgttagctaacagctagcctagctcaaatttcggttattaaactaacgttacctagctaccgattagtggtgaactacacacaaaaacaaacatctttaacctcaccctttcaaatgaatttcatatacagacgattgatgtgccagtatatttcaatttcaagtcttaattgatttgcttttcccattgaactgttactatactataactatactataacagagagctaagagctagctagtttgttgtcatgctgacgtcggatatacgacggagcaccgcgaggtaagattcaataacaaaaaagttaccaataccccaaaaccaatccttaccattagtagttttgtggtagaaattgcctcaaggtcatattacatcatgttaacaagtgtttgaaatattttggaaatgatgttttgctgataaaatactgtaacgaccttgcgtttataagcgcggaaatcgactctgccgcacgatcacctccgcgcgctatgcaaacatgcaatttcactagaggcacgcatttcccaaagtgtttgaaatcttttggaaattatgctttgcctgttaaaatacgtaaaattgatttcctcaaatattataaaatatctccgaggttgaaattctccaaatggcacttcacttctgttgtgttgtaattttatgatagaaattgcctaatgttaatcaccaatgtcactgactaaaatgcatacaattatttctattattattgaaaaagatctcatggttgaaattctacaaattatacctccattctgtcctttagtagtgtttctgtagaaattgccacaaaagtcatattaaatcatgttaatcaccaatgttggaaatctgactaaaaggatattttctgagtaaagtacacaaaatcgtgtagtagttttatggtagaaatattctcatgttcacgaaaagtggttgaaaacctttggaagttatgttgtttttttccccccttttcccccatgaactgtaaatcagtcatttctcccaacagatgtcaaagaaaagctctctctcacacacacacacacacacacacacagcaaggatggagtgacaaagtgcggtgcttaaagacacacacagcctgcaatgtcatttccatattctctaggccgttccgagttcaaggagatgccccgcttgaccgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1912404 lncRNA downstream 14956 18095514 ~ 18103857 (-) True G1671499
TU1912403 lncRNA downstream 15729 18094686 ~ 18103084 (-) True G1671498
TU1912394 lncRNA downstream 27436 18085103 ~ 18091377 (-) True G1671493
TU1912375 lncRNA downstream 77254 18033544 ~ 18041559 (-) True G1671480
TU1912374 lncRNA downstream 87594 18025802 ~ 18031219 (-) True G1671479
TU1912417 lncRNA upstream 1343 18127501 ~ 18159627 (-) True G1671507
TU1912384 lncRNA upstream 3895 18130053 ~ 18137519 (-) True G1671489
TU1912441 lncRNA upstream 9178 18135336 ~ 18191454 (-) False G1671508
TU1912390 lncRNA upstream 10125 18136283 ~ 18143016 (-) False G1671490
TU1912391 lncRNA upstream 10125 18136283 ~ 18142063 (-) True G1671490
LOC110498760 mRNA downstream 666092 17442788 ~ 17452721 (-) False LOC110498760
LOC110498759 mRNA downstream 687757 17428686 ~ 17431056 (-) False LOC110498759
XM_021575963.2 mRNA downstream 744498 17367169 ~ 17374315 (-) True LOC110499078
XM_036955554.1 mRNA downstream 756215 17359654 ~ 17362598 (-) True LOC118942007
XM_036955911.1 mRNA downstream 768353 17346166 ~ 17350460 (-) True LOC118942041
XR_005037946.1 mRNA upstream 247617 18373775 ~ 18381647 (-) False LOC110512504
XR_005037945.1 mRNA upstream 247619 18373777 ~ 18380255 (-) False LOC110512504
XR_005037949.1 mRNA upstream 247619 18373777 ~ 18380255 (-) False LOC110512504
XR_005037948.1 mRNA upstream 247620 18373778 ~ 18380257 (-) False LOC110512504
XR_005037947.1 mRNA upstream 247620 18373778 ~ 18380258 (-) False LOC110512504
TU1912373 other downstream 85971 18022444 ~ 18032842 (-) True G1671478
TU1912371 other downstream 90585 18022444 ~ 18028228 (-) False G1671478
TU1912370 other downstream 91091 18022444 ~ 18027722 (-) False G1671478
TU1910885 other downstream 424229 17687735 ~ 17694584 (-) True G1670142
TU1910889 other downstream 426947 17685976 ~ 17691866 (-) True G1670145
TU1912501 other upstream 274194 18400352 ~ 18406596 (-) True G1671549
TU1912502 other upstream 282966 18409124 ~ 18415464 (-) False G1671550
TU1912503 other upstream 282966 18409124 ~ 18409764 (-) True G1671550
TU1912546 other upstream 439712 18565870 ~ 18617140 (-) False G1671578
TU1912547 other upstream 439712 18565870 ~ 18624587 (-) True G1671578

Expression Profile