RNA id: TU1912386


Basic Information

Item Value
RNA id TU1912386
length 1749
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G1671489
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 18118813 ~ 18137519 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttaggtacatgttatatttaaagggagaattagctctggaagccatctaaacgtgaatcgattctcagttgcagtaacgttacggttcttgaaataaatccctctaggttcatttcacatcaaaataatttcactaatgaaaaaaaatacacacctactgtacacggtcttaaccggttaacacagaacagtatttttcagtaacaacacgtttgtggcgtctgtcttcacacagcaggcgtattcggagaaacagattgctaattagctcaggtagtccactctgtcttccgtaaataagcgctgtgagatggaaatatggtcgtgtgggaaccccagccctataaagctgtgtatcaatttaaattttagttttttgaaaatgggttatcacggatatgaaagataaggtcattacgcctccaaaaacatatcgctagcgaagcttgtatgtctaatgtaacgttatctcatgatgacaaagtcaagcgttagctaacagctagcctagctcaaatttcggttattaaactaacgttacctagctaccgattagtggtgaactacacacaaaaacaaacatctttaacctcaccctttcaaatgaatttcatatacagacgattgatgtgccagtatatttcaatttcaagtcttaattgatttgcttttcccattgaactgttactatactataactatactataacagagagctaagagctagctagtttgttgtcatgctgacgtcggatatacgacggagcaccgcgaggtaagattcaataacaaaaaagttaccaataccccaaaaccaatccttaccattagtagttttgtggtagaaattgcctcaaggtcatattacatcatgttaacaagtgtttgaaatattttggaaatgatgttttgctgataaaatactgtaacgaccttgcgtttataagcgcggaaatcgactctgccgcacgatcacctccgcgcgctatgcaaacatgcaatttcactagaggcacgcatttcccaaagtgtttgaaatcttttggaaattatgctttgcctgttaaaatacgtaaaattgatttcctcaaatattataaaatatctccgaggttgaaattctccaaatggcacttcacttctgttgtgttgtaattttatgatagaaattgcctaatgttaatcaccaatgtcactgactaaaatgcatacaattatttctattattattgaaaaagatctcatggttgaaattctacaaattatacctccattctgtcctttagtagtgtttctgtagaaattgccacaaaagtcatattaaatcatgttaatcaccaatgttggaaatctgactaaaaggatattttctgagtaaagtacacaaaatcgtgtagtagttttatggtagaaatattctcatgttcacgaaaagtggttgaaaacctttggaagttatgttgtttttttccccccttttcccccatgaactgtaaatcagtcatttctcccaacagatgtcaaagaaaagctctctctcacacacacacagcaaggatggagtgacaaagtgcggtgcttaaagacacacagagcctgcaatggcatttccatattctctaggccgttccgagttcaaggagatgccccgcttgaccgtagctcgctctgagtgcagcgaccgtgaaaaaagtaggcccaaaatgaagcctggccctaaatgtcatttgcttttgggtgacagtgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1912411 lncRNA downstream 2840 18115654 ~ 18121558 (-) True G1671504
TU1912404 lncRNA downstream 20541 18095514 ~ 18103857 (-) True G1671499
TU1912403 lncRNA downstream 21314 18094686 ~ 18103084 (-) True G1671498
TU1912394 lncRNA downstream 33021 18085103 ~ 18091377 (-) True G1671493
TU1912375 lncRNA downstream 82839 18033544 ~ 18041559 (-) True G1671480
TU1912441 lncRNA upstream 3547 18135336 ~ 18191454 (-) False G1671508
TU1912390 lncRNA upstream 4494 18136283 ~ 18143016 (-) False G1671490
TU1912391 lncRNA upstream 4494 18136283 ~ 18142063 (-) True G1671490
TU1912446 lncRNA upstream 6397 18138186 ~ 18144231 (-) True G1671511
TU1912392 lncRNA upstream 10438 18142227 ~ 18148406 (-) True G1671491
LOC110498760 mRNA downstream 671677 17442788 ~ 17452721 (-) False LOC110498760
LOC110498759 mRNA downstream 693342 17428686 ~ 17431056 (-) False LOC110498759
XM_021575963.2 mRNA downstream 750083 17367169 ~ 17374315 (-) True LOC110499078
XM_036955554.1 mRNA downstream 761800 17359654 ~ 17362598 (-) True LOC118942007
XM_036955911.1 mRNA downstream 773938 17346166 ~ 17350460 (-) True LOC118942041
XR_005037946.1 mRNA upstream 241986 18373775 ~ 18381647 (-) False LOC110512504
XR_005037945.1 mRNA upstream 241988 18373777 ~ 18380255 (-) False LOC110512504
XR_005037949.1 mRNA upstream 241988 18373777 ~ 18380255 (-) False LOC110512504
XR_005037948.1 mRNA upstream 241989 18373778 ~ 18380257 (-) False LOC110512504
XR_005037947.1 mRNA upstream 241989 18373778 ~ 18380258 (-) False LOC110512504
TU1912373 other downstream 91556 18022444 ~ 18032842 (-) True G1671478
TU1912371 other downstream 96170 18022444 ~ 18028228 (-) False G1671478
TU1912370 other downstream 96676 18022444 ~ 18027722 (-) False G1671478
TU1910885 other downstream 429814 17687735 ~ 17694584 (-) True G1670142
TU1910889 other downstream 432532 17685976 ~ 17691866 (-) True G1670145
TU1912501 other upstream 268563 18400352 ~ 18406596 (-) True G1671549
TU1912502 other upstream 277335 18409124 ~ 18415464 (-) False G1671550
TU1912503 other upstream 277335 18409124 ~ 18409764 (-) True G1671550
TU1912546 other upstream 434081 18565870 ~ 18617140 (-) False G1671578
TU1912547 other upstream 434081 18565870 ~ 18624587 (-) True G1671578

Expression Profile