RNA id: TU1912417


Basic Information

Item Value
RNA id TU1912417
length 1032
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G1671507
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 18127501 ~ 18159627 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaaataccttatttacataagtattcagaccatttgctatgatactggaaattgagctgaggtgcatcctgttttccattgatcatccttgaggtagttctacagcttgaaggcctctcagacatgagaaacaatattttctgggctgatgaaaccaagattacacactgggacatgccgtgccattatgcagaattttattgtacggccttttaacttgcagggatggacactcctgaatgtcttaattataggctaccccgactttgtctcctatttctatcatgttaaatattaaccgctatcagtatcgactgtgagtaggcataataataacacttattcaactgccaatttactattagttcccttcagtaggtataacctaacccctaaaggtttacctttatttgcttcctctgtaaacgccgtcacggccatgtggctattgctaaggatcattagtaacaattgataacataataaaaggctaattaaatcgtttatggagcggaacactgattaagacagcagtttgaacccgatgtatggcaccatacttggctgtgtcatcacccagttccatggttggtgcaggcaatagatgttgtacactattctctatgtacacaaatattccaacattaccacaggttaaataagtgagtgtggcaatttttagaatgaatcaaaccactgtttactttctttcatgccgaaaggttctccaagctatttttttatgattcataaatactttcctaaccctaaatgtaaaaaaaatactctgatcttgtaggtacaagatcagagtatttttttaaaatctaccaactggtgttgaaacggagacaaatatgcatatatttagatatctttccttcattgatccataatattctgaacccgttctctcaatatattctattgagtctgttgacaaaaaccaaagtgaaaaggtgtactgtatttaaagggatgacttattaagacaaatgtactgaaaaccctattgaataaaaactccacgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1912385 lncRNA downstream 1343 18118813 ~ 18126158 (-) False G1671489
TU1912389 lncRNA downstream 1343 18120099 ~ 18126158 (-) False G1671489
TU1912411 lncRNA downstream 5943 18115654 ~ 18121558 (-) True G1671504
TU1912404 lncRNA downstream 23644 18095514 ~ 18103857 (-) True G1671499
TU1912403 lncRNA downstream 24417 18094686 ~ 18103084 (-) True G1671498
TU1912428 lncRNA upstream 17118 18176745 ~ 18201642 (-) False G1671508
TU1912433 lncRNA upstream 28299 18187926 ~ 18201642 (-) False G1671508
TU1912423 lncRNA upstream 33861 18193488 ~ 18201642 (-) False G1671508
TU1912440 lncRNA upstream 33861 18193488 ~ 18203909 (-) False G1671508
TU1912430 lncRNA upstream 44360 18203987 ~ 18210163 (-) True G1671508
LOC110498760 mRNA downstream 674780 17442788 ~ 17452721 (-) False LOC110498760
LOC110498759 mRNA downstream 696445 17428686 ~ 17431056 (-) False LOC110498759
XM_021575963.2 mRNA downstream 753186 17367169 ~ 17374315 (-) True LOC110499078
XM_036955554.1 mRNA downstream 764903 17359654 ~ 17362598 (-) True LOC118942007
XM_036955911.1 mRNA downstream 777041 17346166 ~ 17350460 (-) True LOC118942041
XR_005037946.1 mRNA upstream 214148 18373775 ~ 18381647 (-) False LOC110512504
XR_005037945.1 mRNA upstream 214150 18373777 ~ 18380255 (-) False LOC110512504
XR_005037949.1 mRNA upstream 214150 18373777 ~ 18380255 (-) False LOC110512504
XR_005037948.1 mRNA upstream 214151 18373778 ~ 18380257 (-) False LOC110512504
XR_005037947.1 mRNA upstream 214151 18373778 ~ 18380258 (-) False LOC110512504
TU1912373 other downstream 94659 18022444 ~ 18032842 (-) True G1671478
TU1912371 other downstream 99273 18022444 ~ 18028228 (-) False G1671478
TU1912370 other downstream 99779 18022444 ~ 18027722 (-) False G1671478
TU1910885 other downstream 432917 17687735 ~ 17694584 (-) True G1670142
TU1910889 other downstream 435635 17685976 ~ 17691866 (-) True G1670145
TU1912501 other upstream 240725 18400352 ~ 18406596 (-) True G1671549
TU1912502 other upstream 249497 18409124 ~ 18415464 (-) False G1671550
TU1912503 other upstream 249497 18409124 ~ 18409764 (-) True G1671550
TU1912546 other upstream 406243 18565870 ~ 18617140 (-) False G1671578
TU1912547 other upstream 406243 18565870 ~ 18624587 (-) True G1671578

Expression Profile