Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00050225 |
| length | 590 |
| RNA type | mRNA |
| GC content | 0.50 |
| exon number | 5 |
| gene id | XLOC_025476 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007114.7 |
| NCBI id | CM002887.2 |
| chromosome length | 62628489 |
| location | 32365811 ~ 32401481 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006886 | intracellular protein transport | biological_process |
| GO:0006897 | endocytosis | biological_process |
| GO:0006898 | receptor-mediated endocytosis | biological_process |
| GO:0016192 | vesicle-mediated transport | biological_process |
| GO:0015031 | protein transport | biological_process |
| GO:0060218 | hematopoietic stem cell differentiation | biological_process |
| GO:0009950 | dorsal/ventral axis specification | biological_process |
| GO:0009953 | dorsal/ventral pattern formation | biological_process |
| GO:0072583 | clathrin-dependent endocytosis | biological_process |
| GO:0030117 | membrane coat | cellular_component |
| GO:0030122 | AP-2 adaptor complex | cellular_component |
| GO:0030131 | clathrin adaptor complex | cellular_component |
| GO:0005905 | clathrin-coated pit | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0035615 | clathrin adaptor activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-090302-2 | Predicted to enable clathrin adaptor activity. Acts upstream of or within dorsal/ventral axis specification and hematopoietic stem cell differentiation. Predicted to be located in clathrin-coated pit. Predicted to be part of AP-2 adaptor complex. Orthologous to human AP2A1 (adaptor related protein complex 2 subunit alpha 1). |
| ensembl_id | ENSDART00000156447 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00050222 | lncRNA | upstream | 6409 | 32389560 ~ 32390332 (+) | False | XLOC_025476 |
| TCONS_00052720 | lncRNA | upstream | 49248 | 32346134 ~ 32347493 (+) | True | XLOC_025475 |
| TCONS_00052719 | lncRNA | upstream | 99738 | 32293773 ~ 32297003 (+) | True | XLOC_025473 |
| TCONS_00050213 | lncRNA | upstream | 276648 | 32118677 ~ 32120093 (+) | False | XLOC_025467 |
| TCONS_00050209 | lncRNA | upstream | 296118 | 32099701 ~ 32100623 (+) | True | XLOC_025464 |
| TCONS_00050230 | lncRNA | downstream | 11634 | 32411485 ~ 32414843 (+) | False | XLOC_025478 |
| TCONS_00050231 | lncRNA | downstream | 12027 | 32411878 ~ 32414843 (+) | True | XLOC_025478 |
| TCONS_00050237 | lncRNA | downstream | 20469 | 32420320 ~ 32424231 (+) | True | XLOC_025479 |
| TCONS_00050240 | lncRNA | downstream | 74810 | 32474661 ~ 32477285 (+) | True | XLOC_025481 |
| TCONS_00050249 | lncRNA | downstream | 133061 | 32532912 ~ 32535695 (+) | False | XLOC_025485 |
| TCONS_00050220 | mRNA | upstream | 50841 | 32341917 ~ 32345900 (+) | True | XLOC_025474 |
| TCONS_00050219 | mRNA | upstream | 245574 | 32142382 ~ 32151167 (+) | True | XLOC_025472 |
| TCONS_00050218 | mRNA | upstream | 256295 | 32139666 ~ 32140446 (+) | True | XLOC_025471 |
| TCONS_00050217 | mRNA | upstream | 260513 | 32135037 ~ 32136228 (+) | True | XLOC_025470 |
| TCONS_00050216 | mRNA | upstream | 266286 | 32129632 ~ 32130455 (+) | True | XLOC_025469 |
| TCONS_00050226 | mRNA | downstream | 3907 | 32403758 ~ 32407192 (+) | True | XLOC_025477 |
| TCONS_00050227 | mRNA | downstream | 10895 | 32410746 ~ 32416121 (+) | False | XLOC_025478 |
| TCONS_00050228 | mRNA | downstream | 11492 | 32411343 ~ 32414542 (+) | False | XLOC_025478 |
| TCONS_00050229 | mRNA | downstream | 11594 | 32411445 ~ 32414541 (+) | False | XLOC_025478 |
| TCONS_00050232 | mRNA | downstream | 17097 | 32416948 ~ 32424142 (+) | False | XLOC_025479 |
| TCONS_00050194 | other | upstream | 608104 | 31788521 ~ 31788637 (+) | True | XLOC_025455 |
| TCONS_00050187 | other | upstream | 793037 | 31600648 ~ 31603704 (+) | True | XLOC_025451 |
| TCONS_00050170 | other | upstream | 1701869 | 30694783 ~ 30694872 (+) | True | XLOC_025435 |
| TCONS_00050160 | other | upstream | 2147705 | 30248739 ~ 30249036 (+) | True | XLOC_025429 |
| TCONS_00050148 | other | upstream | 2741816 | 29654160 ~ 29654925 (+) | True | XLOC_025418 |
| TCONS_00050246 | other | downstream | 132745 | 32532596 ~ 32535126 (+) | False | XLOC_025485 |
| TCONS_00050254 | other | downstream | 171458 | 32571309 ~ 32571371 (+) | True | XLOC_025487 |
| TCONS_00050265 | other | downstream | 262140 | 32661991 ~ 32663746 (+) | False | XLOC_025493 |
| TCONS_00050268 | other | downstream | 271339 | 32671190 ~ 32671963 (+) | False | XLOC_025494 |
| TCONS_00050288 | other | downstream | 442943 | 32842794 ~ 32848026 (+) | False | XLOC_025502 |
