RNA id: TU1912446


Basic Information

Item Value
RNA id TU1912446
length 642
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G1671511
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 18138186 ~ 18144231 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtactgaaaaccctattgaataaaaactccacgagaacatctgttggccagccagtgggaaggtttctagcagttcaattacacttatttggcgtgcgcaagtgaaccacgcctacaaagcctgttacgcaccttaataaggttactctgaataccaactactaaaaagtatataggaaaggcgtaatttcctaaatcggacccttagtgaatacaggcccaaacttaatctgtgtctaggaaactggccttgagggttggtcctgacctctctgcaggttgccgatggcctcgttgtagttctccagctccaggtgacactggcacaggaagaagtgggctttgacagaatgggggtccagttccagcgcgtgcttgcagtccgccagggctttgtcgttctgcttgcagcttcacttggcacagagtacggttggtgtagtacaccgccactgaggggttacggttctgttggcaagatgtatacacacacacacacacaggtgcaaccacgcacgttacatattgcacaagctatttttgtaagagtgcatcagaccaagctacttctattctgacatctattcagagtaggtgaataggacagtgtcaatatctcatatcatatagactttcagtcat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1912384 lncRNA downstream 667 18130053 ~ 18137519 (-) True G1671489
TU1912386 lncRNA downstream 6397 18124398 ~ 18131789 (-) False G1671489
TU1912415 lncRNA downstream 9243 18122259 ~ 18128943 (-) True G1671505
TU1912385 lncRNA downstream 12028 18118813 ~ 18126158 (-) False G1671489
TU1912389 lncRNA downstream 12028 18120099 ~ 18126158 (-) False G1671489
TU1912428 lncRNA upstream 32514 18176745 ~ 18201642 (-) False G1671508
TU1912433 lncRNA upstream 43695 18187926 ~ 18201642 (-) False G1671508
TU1912423 lncRNA upstream 49257 18193488 ~ 18201642 (-) False G1671508
TU1912440 lncRNA upstream 49257 18193488 ~ 18203909 (-) False G1671508
TU1912430 lncRNA upstream 59756 18203987 ~ 18210163 (-) True G1671508
LOC110498760 mRNA downstream 685465 17442788 ~ 17452721 (-) False LOC110498760
LOC110498759 mRNA downstream 707130 17428686 ~ 17431056 (-) False LOC110498759
XM_021575963.2 mRNA downstream 763871 17367169 ~ 17374315 (-) True LOC110499078
XM_036955554.1 mRNA downstream 775588 17359654 ~ 17362598 (-) True LOC118942007
XM_036955911.1 mRNA downstream 787726 17346166 ~ 17350460 (-) True LOC118942041
XR_005037946.1 mRNA upstream 229544 18373775 ~ 18381647 (-) False LOC110512504
XR_005037945.1 mRNA upstream 229546 18373777 ~ 18380255 (-) False LOC110512504
XR_005037949.1 mRNA upstream 229546 18373777 ~ 18380255 (-) False LOC110512504
XR_005037948.1 mRNA upstream 229547 18373778 ~ 18380257 (-) False LOC110512504
XR_005037947.1 mRNA upstream 229547 18373778 ~ 18380258 (-) False LOC110512504
TU1912373 other downstream 105344 18022444 ~ 18032842 (-) True G1671478
TU1912371 other downstream 109958 18022444 ~ 18028228 (-) False G1671478
TU1912370 other downstream 110464 18022444 ~ 18027722 (-) False G1671478
TU1910885 other downstream 443602 17687735 ~ 17694584 (-) True G1670142
TU1910889 other downstream 446320 17685976 ~ 17691866 (-) True G1670145
TU1912501 other upstream 256121 18400352 ~ 18406596 (-) True G1671549
TU1912502 other upstream 264893 18409124 ~ 18415464 (-) False G1671550
TU1912503 other upstream 264893 18409124 ~ 18409764 (-) True G1671550
TU1912546 other upstream 421639 18565870 ~ 18617140 (-) False G1671578
TU1912547 other upstream 421639 18565870 ~ 18624587 (-) True G1671578

Expression Profile