RNA id: TU1912489


Basic Information

Item Value
RNA id TU1912489
length 1020
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G1671541
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 18350871 ~ 18369173 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttgaaacggagacaaatatgcatatatttagatatctttccttcattgatccataatattctgaacccgttctctcaatatattctattgagtctgttgacaaaaaccaaagtgaaaaggtgtactgtatttaaagggatgacttattaagacaaatgtactgaaaaccctattgaataaaaactccacgagaacatctgttggccagccagtgggaaggtttctagcagttcaattacacttatttggcgtgcgcaagtgaaccacgcctacaaagcctgttacgcaccttaataaggttactctgaataccaactactaaaaagtatataggaaaggcgttatttcctaaatcggacccttagtgaatacaggcccaaacttaatctgtgtctaggaaactggccttgagggttggtcctgacctctctgcaggttgccgatggcctcgttgtagttctccagctccaggtgacactggcacaggaagaagtgggctttgacagaatgggggtccagttccagcgcgtgcttgcagtccgccagggctttgtcgttctgcttgcagcttcacttggcacagagtacggttggtgtaggacaccgccactgaggggttacggttctgttggcaagatgtatacacacacacacaggtgcaaccacgcacgttacatattgcacaagctatttttgtaagagtgcatcagaccaagctacttctattctgacatctattcagagtaggtgaataggacagtgtcaatatctcatatcatatagactttcagtcatctgaaaaggtgtagacattttacatcatcattccccttaagagcagtagcttgctactcactatggttttgctgtagcaggtggcagcttcctggtacttgcggcagaggaacagttggttgccctgctccttcagctcctgtgctgtggaactcttctctgggctgctagccatcttctctggtggctctgcagcgcactgtttccctatcctgttccccgtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1912483 lncRNA downstream 12080 18347331 ~ 18350834 (-) True G1671540
TU1912481 lncRNA downstream 30677 18331988 ~ 18332237 (-) True G1671538
TU1912473 lncRNA downstream 38310 18321107 ~ 18324604 (-) True G1671531
TU1912462 lncRNA downstream 141495 18215236 ~ 18221419 (-) True G1671526
TU1912430 lncRNA downstream 152751 18203987 ~ 18210163 (-) True G1671508
TU1912494 lncRNA upstream 7054 18376227 ~ 18379575 (-) True LOC110512504
TU1912498 lncRNA upstream 16281 18385454 ~ 18387516 (-) True G1671546
TU1912343 lncRNA upstream 18990 18388163 ~ 18391408 (-) False G1671453
TU1912345 lncRNA upstream 18990 18388163 ~ 18391408 (-) True G1671453
TU1912500 lncRNA upstream 23107 18392280 ~ 18398313 (-) True G1671548
LOC110498760 mRNA downstream 910193 17442788 ~ 17452721 (-) False LOC110498760
LOC110498759 mRNA downstream 931858 17428686 ~ 17431056 (-) False LOC110498759
XM_021575963.2 mRNA downstream 988599 17367169 ~ 17374315 (-) True LOC110499078
XM_036955554.1 mRNA downstream 1000316 17359654 ~ 17362598 (-) True LOC118942007
XM_036955911.1 mRNA downstream 1012454 17346166 ~ 17350460 (-) True LOC118942041
XR_005037946.1 mRNA upstream 4602 18373775 ~ 18381647 (-) False LOC110512504
XR_005037945.1 mRNA upstream 4604 18373777 ~ 18380255 (-) False LOC110512504
XR_005037949.1 mRNA upstream 4604 18373777 ~ 18380255 (-) False LOC110512504
XR_005037948.1 mRNA upstream 4605 18373778 ~ 18380257 (-) False LOC110512504
XR_005037947.1 mRNA upstream 4605 18373778 ~ 18380258 (-) False LOC110512504
TU1912373 other downstream 330072 18022444 ~ 18032842 (-) True G1671478
TU1912371 other downstream 334686 18022444 ~ 18028228 (-) False G1671478
TU1912370 other downstream 335192 18022444 ~ 18027722 (-) False G1671478
TU1910885 other downstream 668330 17687735 ~ 17694584 (-) True G1670142
TU1910889 other downstream 671048 17685976 ~ 17691866 (-) True G1670145
TU1912501 other upstream 31179 18400352 ~ 18406596 (-) True G1671549
TU1912502 other upstream 39951 18409124 ~ 18415464 (-) False G1671550
TU1912503 other upstream 39951 18409124 ~ 18409764 (-) True G1671550
TU1912546 other upstream 196697 18565870 ~ 18617140 (-) False G1671578
TU1912547 other upstream 196697 18565870 ~ 18624587 (-) True G1671578

Expression Profile